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Os07g0171300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0141) R2 : 0.599
β1 : -0.878 (0.0515) R2dD : 0.266 R2D : 0.229
β2 : 0.731 (0.0366) R2dC : 0.353 R2C : 0.334
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.143 (0.03) R2dN8 : 0.0266 R2N8 : -0.0131
σ : 0.264
deviance : 31.88
__
_____
C
peak time of C : 6.69
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.8 0.243 11 -0.607 0.721 0.0829 0.209 2.28 -0.0793 6.9 30.8 2611 -- --
27.11 0.243 11 -0.98 0.766 0.409 0.273 -- -0.11 6.82 28.5 2030 -- --
26.91 0.242 11 -0.596 0.722 0.0779 -- 2.33 -0.0797 6.89 30.77 2611 -- --
26.92 0.242 11 -0.98 0.71 0.322 -- -- -0.101 6.85 29.2 5625 -- --
53.99 0.342 11 -0.349 -- -0.0372 -- 3.29 -0.0344 -- 29.1 2713 -- --
31.75 0.264 11 -0.882 0.73 -- 0.229 -- -0.142 6.69 -- -- -- --
31.88 0.264 11 -0.878 0.731 -- -- -- -0.143 6.69 -- -- -- --
53.22 0.34 11 -0.968 -- 0.352 -- -- -0.0754 -- 29.49 5671 -- --
50.78 0.332 11 -- 0.724 0.181 -- -- -0.0397 6.79 29.42 6158 -- --
59.77 0.361 11.1 -0.861 -- -- -- -- -0.128 -- -- -- -- --
52.2 0.338 11 -- 0.72 -- -- -- -0.0448 6.76 -- -- -- --
66.13 0.379 11 -- -- -0.656 -- -- -0.115 -- 35.1 46738 -- --
79.33 0.416 11 -- -- -- -- -- -0.0325 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.24 precipitation 0.1 270 < th dose independent rect. 3 4
2 22.24 precipitation 0.1 270 < th dose dependent rect. 3 4
3 22.26 radiation 30.0 270 < th dose independent rect. 2 6
5 22.35 atmosphere 995.0 270 > th dose independent rect. 7 20
6 22.38 radiation 20.0 270 < th dose independent rect. 3 4
7 22.40 humidity 70.0 270 > th dose independent rect. 3 4
8 22.41 precipitation 0.1 270 < th dose independent rect. 2 6
9 22.41 precipitation 0.1 270 < th dose dependent rect. 2 6
11 22.45 wind 9.0 270 < th dose independent rect. 3 4
12 22.45 temperature 10.0 270 > th dose independent rect. 3 4
14 22.45 temperature 30.0 270 < th dose independent rect. 3 4
15 22.45 humidity 50.0 270 > th dose independent rect. 3 4
17 22.45 atmosphere 995.0 270 > th dose independent rect. 3 4
18 22.45 atmosphere 1015.0 270 < th dose independent rect. 3 4
20 22.45 temperature 10.0 270 > th dose independent rect. 7 20
21 22.45 humidity 50.0 270 > th dose independent rect. 7 20
24 22.51 atmosphere 995.0 270 > th dose independent rect. 8 18
25 22.54 humidity 50.0 270 > th dose dependent rect. 3 4
26 22.55 humidity 70.0 270 > th dose independent rect. 2 6
27 22.56 wind 9.0 270 < th dose independent rect. 7 20
28 22.56 radiation 40.0 270 < th dose dependent rect. 3 4
29 22.57 temperature 10.0 270 > th dose dependent rect. 12 10
30 22.61 temperature 10.0 270 > th dose dependent rect. 3 17
31 22.62 wind 9.0 270 < th dose independent rect. 2 6
32 22.62 temperature 10.0 270 > th dose independent rect. 2 6
34 22.62 temperature 30.0 270 < th dose independent rect. 2 6
35 22.62 humidity 50.0 270 > th dose independent rect. 2 6
37 22.62 atmosphere 995.0 270 > th dose independent rect. 2 6
38 22.62 atmosphere 1015.0 270 < th dose independent rect. 2 6
39 22.62 temperature 10.0 270 > th dose independent rect. 8 18
42 22.65 temperature 30.0 270 < th dose independent rect. 7 20
45 22.67 humidity 50.0 270 > th dose independent rect. 8 18
46 22.68 temperature 10.0 270 > th dose dependent rect. 3 4
49 22.69 temperature 10.0 270 > th dose dependent rect. 2 6
52 22.72 wind 9.0 270 < th dose independent rect. 8 18
54 22.80 temperature 30.0 270 < th dose independent rect. 8 18
55 22.82 precipitation 0.1 270 < th dose independent rect. 7 20
56 22.82 precipitation 0.1 270 < th dose dependent rect. 7 20
63 22.88 wind 9.0 270 < th dose dependent rect. 3 4
69 22.95 precipitation 0.1 270 < th dose independent rect. 8 18
71 22.95 precipitation 0.1 270 < th dose dependent rect. 8 18
76 22.97 humidity 50.0 270 > th dose dependent rect. 2 6
79 23.01 precipitation 0.1 270 < th dose independent rect. 3 16
80 23.01 precipitation 0.1 270 < th dose dependent rect. 3 16
126 23.17 atmosphere 995.0 270 > th dose dependent rect. 8 19
132 23.20 atmosphere 1015.0 270 < th dose dependent rect. 13 8
159 23.27 precipitation 0.1 270 < th dose independent rect. 15 16
161 23.27 precipitation 0.1 270 < th dose dependent rect. 15 16
163 23.28 temperature 15.0 270 > th dose independent rect. 12 10
164 23.28 atmosphere 995.0 270 > th dose dependent rect. 20 7
178 23.37 precipitation 0.1 270 < th dose independent rect. 12 10
179 23.37 precipitation 0.1 270 < th dose dependent rect. 12 10
183 23.44 atmosphere 1000.0 270 > th dose independent rect. 20 7
185 23.44 temperature 10.0 270 > th dose independent rect. 22 14
186 23.44 atmosphere 995.0 270 > th dose independent rect. 22 14
189 23.44 wind 9.0 270 < th dose dependent rect. 2 6
197 23.48 atmosphere 995.0 270 > th dose dependent rect. 21 5
200 23.50 wind 9.0 270 < th dose independent rect. 19 8
203 23.51 wind 9.0 270 < th dose independent rect. 22 14
206 23.52 temperature 10.0 270 > th dose independent rect. 19 8
207 23.52 temperature 30.0 270 < th dose independent rect. 19 8
208 23.52 humidity 50.0 270 > th dose independent rect. 19 8
210 23.52 radiation 1.0 270 < th dose independent rect. 19 8
215 23.52 temperature 10.0 270 > th dose independent rect. 3 16
216 23.52 atmosphere 1015.0 270 < th dose independent rect. 3 16
219 23.52 radiation 1.0 270 < th dose dependent rect. 19 8
264 23.59 humidity 50.0 270 > th dose independent rect. 22 14
274 23.62 temperature 15.0 270 > th dose independent rect. 15 16
276 23.62 humidity 50.0 270 > th dose dependent rect. 19 8
282 23.64 atmosphere 995.0 270 > th dose independent rect. 7 8
283 23.64 wind 9.0 270 < th dose independent rect. 3 16
301 23.65 atmosphere 1010.0 270 < th dose independent rect. 12 9
311 23.66 temperature 10.0 270 > th dose independent rect. 7 8
312 23.66 atmosphere 1015.0 270 < th dose independent rect. 7 8
317 23.66 temperature 10.0 270 > th dose dependent rect. 4 2
324 23.67 atmosphere 1015.0 90 < th dose dependent rect. 15 8
328 23.69 atmosphere 1015.0 270 < th dose dependent rect. 14 17
329 23.70 wind 9.0 270 < th dose independent rect. 7 8
337 23.72 radiation 40.0 270 < th dose independent rect. 15 16
340 23.73 atmosphere 995.0 270 > th dose dependent rect. 22 3
345 23.74 wind 1.0 270 > th dose independent rect. 12 10
352 23.75 precipitation 0.1 270 < th dose independent rect. 7 8
353 23.75 precipitation 0.1 270 < th dose independent rect. 19 8
357 23.75 wind 9.0 270 < th dose independent rect. 15 16
360 23.75 precipitation 0.1 270 < th dose dependent rect. 7 8
361 23.75 precipitation 0.1 270 < th dose dependent rect. 19 8
364 23.76 wind 9.0 270 < th dose independent rect. 12 10
369 23.78 wind 1.0 270 > th dose independent rect. 8 18
416 23.85 precipitation 0.1 270 < th dose independent rect. 22 14
421 23.85 precipitation 0.1 270 < th dose dependent rect. 22 14
475 23.95 temperature 10.0 10 > th dose dependent rect. 5 17
537 24.03 atmosphere 1015.0 10 < th dose dependent rect. 16 17
539 24.04 atmosphere 1000.0 270 > th dose independent rect. 22 3
578 24.13 radiation 1.0 90 > th dose independent rect. 17 16
588 24.15 radiation 1.0 270 < th dose dependent rect. 7 20
602 24.18 wind 1.0 270 > th dose independent rect. 7 20
609 24.19 radiation 1.0 90 < th dose dependent sin 11 NA
630 24.22 radiation 40.0 90 < th dose independent rect. 4 18
631 24.22 atmosphere 995.0 270 > th dose dependent rect. 3 4
650 24.26 wind 1.0 270 > th dose independent rect. 3 4
651 24.26 precipitation 0.1 270 < th dose independent rect. 1 21
652 24.26 precipitation 0.1 270 < th dose dependent rect. 1 21
664 24.30 wind 1.0 270 > th dose independent rect. 1 7
685 24.33 atmosphere 1015.0 270 < th dose dependent rect. 3 4
693 24.35 radiation 1.0 90 > th dose independent sin 11 NA
707 24.37 atmosphere 1015.0 270 < th dose independent rect. 8 18
724 24.39 wind 1.0 270 > th dose independent rect. 7 8
773 24.44 humidity 80.0 270 > th dose independent rect. 22 3
803 24.45 wind 9.0 270 < th dose dependent rect. 19 8
816 24.47 temperature 15.0 270 > th dose independent rect. 1 21
824 24.48 radiation 1.0 90 < th dose independent sin 11 NA
830 24.48 temperature 10.0 270 > th dose dependent rect. 12 20
861 24.53 wind 9.0 270 < th dose dependent rect. 20 6
865 24.54 humidity 50.0 270 > th dose independent rect. 7 7
867 24.54 radiation 1.0 270 > th dose independent rect. 7 8
882 24.55 radiation 1.0 270 < th dose independent rect. 8 19
888 24.55 temperature 10.0 270 > th dose dependent rect. 14 18
902 24.57 temperature 10.0 10 > th dose dependent rect. 16 17
908 24.58 atmosphere 1015.0 270 < th dose independent rect. 7 20
909 24.58 radiation 40.0 90 < th dose independent rect. 3 20
917 24.59 radiation 1.0 30 > th dose independent rect. 5 4
929 24.59 temperature 15.0 10 > th dose independent rect. 16 17
943 24.61 wind 5.0 270 < th dose independent rect. 22 3
985 24.65 humidity 50.0 270 > th dose dependent rect. 22 3