Os07g0171200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose-1-phosphate uridyl transferase, class I family protein.
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Os07g0171200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose-1-phosphate uridyl transferase, class I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.62 | 0.192 | 11.4 | -0.141 | 0.0964 | -0.34 | 0.772 | 0.226 | -0.243 | 8.25 | 81.7 | 225 | -- | -- |
| 16.72 | 0.19 | 11.4 | -0.128 | 0.0992 | -0.347 | 0.832 | -- | -0.243 | 7.73 | 82 | 223 | -- | -- |
| 18.42 | 0.2 | 11.4 | -0.129 | 0.104 | -0.352 | -- | 0.343 | -0.245 | 7.97 | 81.49 | 241 | -- | -- |
| 18.69 | 0.201 | 11.4 | -0.108 | 0.0967 | -0.344 | -- | -- | -0.243 | 7.33 | 81.47 | 214 | -- | -- |
| 18.88 | 0.202 | 11.4 | -0.123 | -- | -0.309 | -- | 0.26 | -0.239 | -- | 81.78 | 214 | -- | -- |
| 21.63 | 0.218 | 11.4 | -0.173 | 0.0537 | -- | -0.814 | -- | -0.2 | 19.4 | -- | -- | -- | -- |
| 21.73 | 0.218 | 11.4 | -0.148 | 0.179 | -- | -- | -- | -0.198 | 14.8 | -- | -- | -- | -- |
| 18.97 | 0.203 | 11.4 | -0.121 | -- | -0.289 | -- | -- | -0.236 | -- | 80.45 | 119 | -- | -- |
| 18.99 | 0.203 | 11.4 | -- | 0.105 | -0.359 | -- | -- | -0.236 | 7.41 | 82 | 222 | -- | -- |
| 23.59 | 0.227 | 11.4 | -0.155 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 22.3 | 0.221 | 11.4 | -- | 0.182 | -- | -- | -- | -0.181 | 14.8 | -- | -- | -- | -- |
| 19.36 | 0.205 | 11.4 | -- | -- | -0.298 | -- | -- | -0.227 | -- | 81 | 119 | -- | -- |
| 24.23 | 0.23 | 11.4 | -- | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.30 | humidity | 60 | 30 | > th | dose dependent | sin | 4 | NA |
| 17 | 15.68 | humidity | 80 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 31 | 15.83 | humidity | 90 | 30 | < th | dose dependent | sin | 6 | NA |
| 81 | 16.07 | temperature | 25 | 10 | > th | dose dependent | sin | 6 | NA |
| 88 | 16.10 | humidity | 80 | 10 | > th | dose independent | sin | 4 | NA |
| 106 | 16.14 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 110 | 16.16 | humidity | 90 | 270 | < th | dose independent | sin | 5 | NA |
| 119 | 16.17 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 126 | 16.19 | humidity | 60 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 160 | 16.25 | humidity | 90 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 217 | 16.36 | humidity | 90 | 270 | < th | dose independent | rect. | 2 | 9 |
| 218 | 16.36 | humidity | 90 | 270 | < th | dose independent | rect. | 2 | 11 |
| 219 | 16.36 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 13 |
| 224 | 16.37 | humidity | 90 | 270 | > th | dose independent | rect. | 22 | 17 |
| 251 | 16.40 | humidity | 80 | 10 | < th | dose independent | sin | 4 | NA |
| 296 | 16.46 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 15 |
| 297 | 16.46 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 17 |
| 394 | 16.56 | radiation | 10 | 270 | > th | dose independent | sin | 8 | NA |
| 418 | 16.59 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 5 |
| 435 | 16.60 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 522 | 16.68 | humidity | 90 | 270 | < th | dose independent | rect. | 1 | 22 |
| 568 | 16.72 | humidity | 80 | 10 | < th | dose independent | rect. | 20 | 20 |
| 623 | 16.77 | humidity | 80 | 270 | > th | dose dependent | no | NA | NA |
| 660 | 16.79 | humidity | 80 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 684 | 16.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 705 | 16.83 | humidity | 80 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 755 | 16.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 815 | 16.92 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 5 |
| 918 | 16.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 16 |
| 929 | 16.98 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 938 | 16.99 | radiation | 20 | 30 | > th | dose independent | sin | 4 | NA |
| 943 | 16.99 | humidity | 90 | 270 | < th | dose independent | rect. | 17 | 23 |
| 946 | 16.99 | radiation | 10 | 270 | < th | dose dependent | sin | 5 | NA |
| 971 | 17.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 972 | 17.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |