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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0170900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0357) R2 : 0.124
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.4 (0.675) R2dE : 0.123 R2E : 0.123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.04 (0.0752) R2dN8 : 0.000702 R2N8 : 0.000954
σ : 0.673
deviance : 207.4
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 78.92
memory length : 84
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.31
open length of G : 1.99

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.5 0.675 2.82 0.0771 0.115 2.85 -0.0688 10.6 -0.0373 2.36 79.42 88 2.07 2.07
206.53 0.674 2.82 0.0555 0.113 5.34 -0.0569 -- -0.0364 2.31 79.42 88 2.07 2.07
206.52 0.669 2.82 0.0794 0.114 2.83 -- 10.7 -0.0368 2.22 79.42 86 2.17 2.08
206.54 0.674 2.82 0.0571 0.113 5.33 -- -- -0.036 2.2 79.42 88 2.07 2.07
207.3 0.671 2.81 0.0811 -- 3.01 -- 10.1 -0.0335 -- 79.74 86 2.47 2.11
234.71 0.718 2.82 0.1 0.156 -- 0.102 -- -0.0469 2.76 -- -- -- --
234.75 0.717 2.82 0.0975 0.156 -- -- -- -0.0475 2.77 -- -- -- --
207.3 0.674 2.82 0.0615 -- 5.38 -- -- -0.0332 -- 78.92 84 2.31 1.99
206.63 0.673 2.82 -- 0.114 5.35 -- -- -0.0423 2.21 78.81 82 2.22 1.99
236.17 0.718 2.82 0.104 -- -- -- -- -0.0435 -- -- -- -- --
235 0.717 2.83 -- 0.158 -- -- -- -0.0584 2.78 -- -- -- --
207.4 0.673 2.82 -- -- 5.4 -- -- -0.04 -- 78.92 84 2.31 1.99
236.45 0.718 2.82 -- -- -- -- -- -0.0551 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.53 humidity 80.0 90 < th dose independent rect. 2 2
2 206.54 humidity 80.0 90 < th dose dependent rect. 2 2
3 206.57 humidity 90.0 10 < th dose dependent rect. 3 1
6 206.86 humidity 80.0 10 < th dose independent rect. 3 1
37 209.46 wind 7.0 90 > th dose independent rect. 20 2
38 209.47 wind 7.0 90 > th dose dependent rect. 21 1
43 209.49 precipitation 0.1 90 > th dose independent rect. 21 1
54 209.49 precipitation 0.1 90 > th dose dependent rect. 21 1
96 209.56 precipitation 0.1 10 > th dose independent rect. 21 1
107 209.56 precipitation 0.1 10 > th dose dependent rect. 21 1
287 216.15 wind 3.0 10 > th dose dependent rect. 3 1
342 218.25 wind 7.0 30 > th dose dependent sin 11 NA
367 218.96 humidity 80.0 1440 > th dose independent rect. 3 1
368 218.96 humidity 80.0 720 < th dose independent rect. 2 2
372 218.97 humidity 80.0 720 < th dose dependent rect. 2 1
378 219.02 precipitation 0.1 90 > th dose independent sin 15 NA
390 219.19 humidity 80.0 270 < th dose dependent rect. 24 4
395 219.30 temperature 20.0 90 < th dose dependent rect. 2 1
409 219.51 precipitation 0.1 90 < th dose independent sin 15 NA
410 219.51 precipitation 0.1 90 < th dose dependent sin 15 NA
512 219.96 temperature 25.0 720 < th dose dependent rect. 16 1
570 220.34 precipitation 0.1 90 < th dose independent sin 13 NA
571 220.34 precipitation 0.1 90 < th dose dependent sin 13 NA
577 220.39 precipitation 0.1 30 > th dose dependent sin 15 NA
797 221.42 humidity 80.0 270 < th dose dependent rect. 24 7
799 221.45 temperature 15.0 720 > th dose independent rect. 17 7
801 221.51 temperature 25.0 720 < th dose dependent rect. 13 6
847 221.67 humidity 80.0 10 < th dose independent rect. 24 5
867 221.73 atmosphere 1005.0 720 > th dose dependent rect. 16 1
885 221.86 atmosphere 1015.0 1440 < th dose independent rect. 24 10
924 222.06 humidity 80.0 270 < th dose independent rect. 23 10
945 222.17 temperature 25.0 10 < th dose dependent rect. 9 1
974 222.31 temperature 20.0 720 < th dose dependent rect. 12 13