FiT-DB / Search/ Help/ Sample detail

Os07g0170800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.09 (0.026) R2 : 0.895
β1 : 0.821 (0.095) R2dD : 0.0178 R2D : 0.00884
β2 : 5.42 (0.0885) R2dC : 1.48 R2C : 0.459
β3 : 2.75 (0.0854) R2dE : 0.415 R2E : -0.592
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.202 (0.0554) R2dN8 : 0.00404 R2N8 : -0.00902
σ : 0.485
deviance : 108.59
__
_____
C
peak time of C : 18.6
E
wheather : radiation
threshold : 0.009992
memory length : 286
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.93
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.02 0.472 9.1 0.825 5.43 2.76 -0.907 0.969 0.201 18.6 0.0006943 291 1.97 --
102.94 0.473 9.11 0.795 5.43 2.8 -1.41 -- 0.188 18.5 0.009992 290 1.96 --
102.41 0.471 9.09 0.848 5.42 2.75 -- 1.47 0.2 18.6 1.362e-06 289 1.97 --
108.59 0.485 9.09 0.821 5.42 2.75 -- -- 0.202 18.6 0.009992 286 1.93 --
543.33 1.09 8.97 0.822 -- 2.78 -- -0.461 0.178 -- 1.294 6 11 --
163.75 0.6 9.08 0.74 3.92 -- -0.55 -- 0.178 20.3 -- -- -- --
164.67 0.601 9.08 0.756 3.92 -- -- -- 0.178 20.3 -- -- -- --
179.94 0.627 8.96 0.761 -- 3.86 -- -- 0.199 -- 173.7 2 9.85 --
126.57 0.524 9.11 -- 5.42 2.73 -- -- 0.166 18.6 0.1208 293 2.14 --
1019.38 1.49 8.98 0.732 -- -- -- -- 0.136 -- -- -- -- --
179.73 0.627 9.1 -- 3.92 -- -- -- 0.0933 20.4 -- -- -- --
182.9 0.632 8.99 -- -- 3.91 -- -- 0.0983 -- 767.6 11 9.75 --
1033.5 1.5 9 -- -- -- -- -- 0.0545 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.40 temperature 15.0 270 > th dose independent rect. 5 17
4 100.15 wind 7.0 270 < th dose independent rect. 11 18
5 100.25 wind 5.0 270 < th dose independent rect. 22 7
8 101.26 wind 7.0 270 < th dose independent rect. 12 16
10 101.57 radiation 40.0 270 < th dose independent rect. 5 18
11 101.59 temperature 20.0 90 > th dose independent rect. 5 8
12 101.65 radiation 1.0 270 < th dose dependent rect. 22 13
13 101.73 temperature 20.0 270 > th dose independent rect. 5 6
18 102.52 radiation 40.0 270 < th dose independent rect. 5 6
23 103.25 radiation 1.0 270 < th dose dependent rect. 22 9
25 103.45 radiation 1.0 270 < th dose dependent sin 8 NA
32 104.03 temperature 15.0 270 > th dose independent rect. 18 16
34 104.21 precipitation 0.1 270 < th dose independent rect. 22 7
35 104.21 precipitation 0.1 270 < th dose dependent rect. 22 7
36 104.33 radiation 1.0 270 < th dose independent rect. 22 13
38 104.44 radiation 1.0 270 < th dose independent rect. 22 8
39 104.46 precipitation 0.1 270 < th dose independent rect. 11 18
40 104.46 precipitation 0.1 270 < th dose dependent rect. 11 18
47 104.90 temperature 30.0 270 < th dose independent rect. 5 6
54 105.36 wind 9.0 270 < th dose dependent rect. 22 7
55 105.38 temperature 10.0 270 > th dose independent rect. 22 7
56 105.38 temperature 30.0 270 < th dose independent rect. 22 7
57 105.38 humidity 50.0 270 > th dose independent rect. 22 7
60 105.38 atmosphere 995.0 270 > th dose independent rect. 22 7
61 105.38 radiation 20.0 270 < th dose independent rect. 22 7
65 105.38 radiation 20.0 270 < th dose dependent rect. 22 7
91 105.94 atmosphere 1015.0 270 < th dose independent rect. 5 17
106 106.62 temperature 30.0 270 < th dose independent rect. 4 8
119 107.02 temperature 20.0 10 > th dose independent rect. 6 7
158 107.59 temperature 30.0 270 < th dose independent rect. 5 17
159 107.72 atmosphere 995.0 270 > th dose independent rect. 5 17
160 107.75 temperature 30.0 270 < th dose independent rect. 17 17
164 107.88 precipitation 0.1 270 < th dose independent rect. 5 6
165 107.88 precipitation 0.1 270 < th dose dependent rect. 5 6
167 107.91 atmosphere 995.0 270 > th dose independent rect. 5 6
168 107.91 atmosphere 1015.0 270 < th dose independent rect. 5 6
169 107.91 temperature 10.0 270 > th dose independent rect. 11 18
171 107.95 wind 9.0 270 < th dose independent rect. 5 6
174 108.07 radiation 1.0 270 < th dose independent sin 8 NA
175 108.15 wind 9.0 270 < th dose independent rect. 5 17
178 108.22 wind 9.0 270 < th dose independent rect. 9 9
180 108.37 temperature 30.0 270 < th dose independent rect. 18 15
187 108.52 humidity 50.0 270 > th dose independent rect. 5 6
191 108.58 radiation 1.0 270 > th dose independent sin 8 NA
232 109.53 humidity 60.0 270 > th dose independent rect. 18 15
235 109.68 atmosphere 995.0 270 > th dose independent rect. 18 15
238 109.72 atmosphere 1015.0 270 < th dose independent rect. 23 6
240 109.87 precipitation 0.1 270 < th dose independent rect. 5 17
241 109.87 precipitation 0.1 270 < th dose dependent rect. 5 17
256 110.09 temperature 10.0 270 > th dose independent rect. 9 9
257 110.09 atmosphere 1015.0 270 < th dose independent rect. 9 9
267 110.21 atmosphere 995.0 270 > th dose dependent rect. 23 6
269 110.30 precipitation 0.1 270 < th dose independent rect. 9 9
270 110.30 precipitation 0.1 270 < th dose dependent rect. 9 9
285 110.70 humidity 60.0 270 > th dose independent rect. 17 17
287 110.77 wind 9.0 270 < th dose independent rect. 18 15
298 110.96 wind 9.0 270 < th dose dependent rect. 12 17
308 111.33 temperature 15.0 270 > th dose independent rect. 3 22
317 111.49 radiation 40.0 270 < th dose dependent rect. 6 17
321 111.58 humidity 50.0 270 > th dose independent rect. 5 17
331 111.70 wind 1.0 270 > th dose independent rect. 23 6
332 111.71 radiation 1.0 270 > th dose independent rect. 10 8
333 111.71 wind 1.0 270 > th dose independent rect. 9 9
354 111.92 radiation 40.0 270 < th dose independent rect. 18 16
364 112.21 radiation 1.0 270 > th dose independent rect. 4 7
396 112.47 temperature 15.0 270 > th dose independent rect. 16 8
430 112.75 humidity 50.0 270 > th dose dependent rect. 22 7
432 112.84 humidity 50.0 270 > th dose dependent rect. 5 17
496 113.66 wind 9.0 270 < th dose dependent rect. 5 6
498 113.71 radiation 40.0 270 < th dose dependent rect. 5 7
584 114.56 radiation 20.0 270 < th dose independent rect. 15 9
586 114.57 humidity 50.0 270 > th dose dependent rect. 5 6
589 114.66 wind 9.0 10 < th dose independent rect. 6 7
591 114.67 precipitation 0.1 10 < th dose independent rect. 13 17
592 114.67 precipitation 0.1 10 < th dose dependent rect. 13 17
599 114.83 humidity 90.0 90 < th dose independent rect. 6 6
603 114.85 temperature 10.0 10 > th dose independent rect. 6 7
605 114.85 atmosphere 995.0 10 > th dose independent rect. 6 7
606 114.85 atmosphere 1015.0 10 < th dose independent rect. 6 7
607 114.85 temperature 10.0 10 > th dose independent rect. 13 17
615 114.89 precipitation 0.1 10 < th dose independent rect. 6 7
618 114.89 precipitation 0.1 10 < th dose dependent rect. 6 7
646 115.09 radiation 40.0 270 < th dose dependent rect. 15 9
647 115.10 precipitation 0.1 270 < th dose independent rect. 18 15
649 115.10 precipitation 0.1 270 < th dose dependent rect. 18 15
653 115.17 wind 1.0 270 > th dose independent rect. 11 18
684 115.44 temperature 10.0 270 > th dose dependent rect. 10 8
697 115.54 wind 1.0 10 > th dose independent rect. 6 7
703 115.65 temperature 15.0 270 > th dose independent rect. 17 6
733 115.90 temperature 15.0 1440 > th dose independent rect. 7 6
754 115.97 atmosphere 995.0 270 > th dose independent rect. 11 18
766 116.16 atmosphere 995.0 1440 > th dose independent rect. 7 7
768 116.16 temperature 10.0 1440 > th dose independent rect. 14 17
773 116.17 temperature 10.0 270 > th dose dependent rect. 11 17
863 116.64 radiation 1.0 10 > th dose independent rect. 6 7
889 116.85 humidity 50.0 270 > th dose independent rect. 16 8
913 116.97 wind 1.0 90 > th dose independent rect. 6 7
935 117.15 wind 5.0 270 < th dose independent rect. 1 2
959 117.23 radiation 40.0 270 < th dose dependent rect. 6 4
966 117.28 humidity 50.0 14400 > th dose independent rect. 1 8
989 117.42 atmosphere 995.0 270 > th dose independent rect. 10 8