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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0170500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0381) R2 : 0.00345
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.101 (0.0802) R2dN8 : 0.00446 R2N8 : 0.00345
σ : 0.717
deviance : 235.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.64 0.707 3.1 -1.15 0.189 3.39 -0.0205 -17.1 -0.077 5.95 999.9 60 -- --
230.86 0.713 2.9 -0.0358 0.191 0.346 0.012 -- -0.0786 5.48 999.9 60 -- --
226.64 0.701 3.1 -1.15 0.189 3.39 -- -17.1 -0.0769 5.94 999.9 60 -- --
226.54 0.701 2.9 -0.000491 0.209 0.408 -- -- -0.062 5.53 1002 49 -- --
228.49 0.704 3.1 -1.15 -- 3.39 -- -17.1 -0.0729 -- 999.9 60 -- --
234.14 0.717 2.91 0.0263 0.186 -- -0.0134 -- -0.102 5.64 -- -- -- --
234.14 0.717 2.9 0.0263 0.186 -- -- -- -0.102 5.63 -- -- -- --
228.71 0.704 2.9 -0.0089 -- 0.412 -- -- -0.0429 -- 1002 49 -- --
226.51 0.701 2.89 -- 0.205 0.42 -- -- -0.0473 5.42 1002 49 -- --
235.93 0.718 2.91 0.0322 -- -- -- -- -0.0972 -- -- -- -- --
234.16 0.716 2.91 -- 0.186 -- -- -- -0.105 5.63 -- -- -- --
228.71 0.704 2.9 -- -- 0.412 -- -- -0.0421 -- 1002 49 -- --
235.96 0.717 2.91 -- -- -- -- -- -0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 217.21 atmosphere 1000.0 90 < th dose independent rect. 21 3
2 218.27 humidity 60.0 10 < th dose independent rect. 14 1
5 218.40 atmosphere 1000.0 10 < th dose independent rect. 20 5
9 218.49 temperature 20.0 90 < th dose dependent rect. 2 1
16 219.28 humidity 80.0 90 > th dose dependent rect. 2 1
17 219.31 humidity 60.0 30 < th dose independent rect. 12 3
28 219.73 atmosphere 1000.0 90 > th dose independent rect. 3 23
29 219.91 wind 3.0 90 < th dose independent rect. 2 1
35 220.25 atmosphere 1000.0 270 < th dose independent rect. 21 1
37 220.33 humidity 90.0 90 > th dose independent rect. 2 1
44 220.58 wind 3.0 10 < th dose independent rect. 12 3
47 220.64 wind 5.0 90 < th dose dependent rect. 2 1
67 221.28 wind 3.0 10 < th dose dependent rect. 12 2
76 221.87 atmosphere 1000.0 10 < th dose independent rect. 20 16
77 221.89 atmosphere 1000.0 90 > th dose independent rect. 2 1
85 222.10 atmosphere 1005.0 90 < th dose dependent rect. 13 1
86 222.12 temperature 30.0 90 < th dose dependent rect. 2 1
87 222.13 atmosphere 1005.0 10 < th dose dependent rect. 14 1
104 222.34 precipitation 0.1 90 < th dose independent rect. 2 1
107 222.34 precipitation 0.1 90 < th dose dependent rect. 2 1
111 222.36 temperature 10.0 90 > th dose independent rect. 2 1
113 222.36 temperature 30.0 90 < th dose independent rect. 2 1
114 222.36 humidity 50.0 90 > th dose independent rect. 2 1
118 222.36 atmosphere 1010.0 90 < th dose independent rect. 2 1
120 222.36 radiation 1.0 90 < th dose independent rect. 2 1
126 222.36 temperature 10.0 90 > th dose independent rect. 3 23
127 222.36 radiation 1.0 90 < th dose dependent rect. 2 1
134 222.40 humidity 90.0 30 > th dose independent rect. 2 3
151 222.57 atmosphere 995.0 90 > th dose dependent rect. 2 1
158 222.75 humidity 80.0 30 > th dose dependent rect. 2 3
182 223.01 wind 1.0 90 > th dose independent rect. 2 1
212 223.32 atmosphere 1015.0 90 < th dose dependent rect. 2 1
213 223.34 temperature 20.0 30 > th dose dependent rect. 2 1
222 223.40 wind 1.0 270 < th dose dependent rect. 20 1
242 223.54 radiation 40.0 10 > th dose dependent rect. 13 1
281 223.63 atmosphere 1000.0 10 < th dose independent sin 10 NA
306 223.75 wind 5.0 10 < th dose independent rect. 2 3
314 223.83 radiation 40.0 90 > th dose dependent rect. 13 1
340 223.88 precipitation 0.1 90 < th dose independent rect. 3 23
343 223.88 precipitation 0.1 90 < th dose dependent rect. 3 23
345 223.90 radiation 40.0 10 > th dose independent rect. 13 1
353 223.99 wind 9.0 1440 < th dose independent rect. 3 1
354 223.99 temperature 10.0 1440 > th dose independent rect. 3 1
357 223.99 temperature 30.0 1440 < th dose independent rect. 3 1
361 223.99 humidity 50.0 1440 > th dose independent rect. 3 1
370 223.99 atmosphere 995.0 1440 > th dose independent rect. 3 1
371 223.99 radiation 1.0 1440 < th dose independent rect. 3 1
392 223.99 temperature 10.0 1440 > th dose independent rect. 4 23
396 223.99 radiation 1.0 1440 < th dose dependent rect. 3 1
402 224.00 humidity 90.0 90 > th dose independent rect. 9 1
404 224.00 humidity 90.0 90 > th dose dependent rect. 9 1
429 224.10 temperature 25.0 270 > th dose independent rect. 19 1
436 224.11 atmosphere 1000.0 10 < th dose independent rect. 7 1
445 224.11 atmosphere 1000.0 10 < th dose dependent rect. 7 1
486 224.21 atmosphere 1000.0 30 > th dose independent sin 10 NA
490 224.23 precipitation 0.1 1440 < th dose independent rect. 22 4
493 224.23 precipitation 0.1 1440 < th dose dependent rect. 22 4
499 224.26 atmosphere 1005.0 90 < th dose independent rect. 12 1
501 224.26 atmosphere 1000.0 10 > th dose independent rect. 2 3
547 224.34 wind 9.0 1440 < th dose independent rect. 3 3
548 224.34 temperature 10.0 1440 > th dose independent rect. 3 3
551 224.34 temperature 30.0 1440 < th dose independent rect. 3 3
555 224.34 humidity 50.0 1440 > th dose independent rect. 3 3
564 224.34 atmosphere 995.0 1440 > th dose independent rect. 3 3
565 224.34 radiation 20.0 1440 < th dose independent rect. 3 3
574 224.34 temperature 10.0 1440 > th dose independent rect. 6 21
595 224.42 wind 9.0 10 < th dose dependent rect. 2 3
619 224.45 humidity 60.0 720 > th dose dependent rect. 2 1
623 224.51 atmosphere 1000.0 720 > th dose independent rect. 19 7
636 224.54 precipitation 0.1 30 < th dose independent rect. 2 3
639 224.54 precipitation 0.1 30 < th dose dependent rect. 2 3
641 224.55 precipitation 0.1 1440 > th dose independent rect. 22 4
646 224.55 precipitation 0.1 1440 > th dose dependent rect. 22 4
652 224.60 radiation 1.0 10 < th dose dependent rect. 2 3
656 224.61 wind 1.0 90 > th dose independent rect. 5 20
659 224.62 temperature 10.0 10 > th dose independent rect. 2 3
661 224.62 temperature 30.0 10 < th dose independent rect. 2 3
662 224.62 humidity 50.0 10 > th dose independent rect. 2 3
666 224.62 atmosphere 1010.0 10 < th dose independent rect. 2 3
668 224.62 radiation 1.0 10 < th dose independent rect. 2 3
673 224.62 temperature 10.0 10 > th dose independent rect. 5 21
683 224.65 precipitation 0.1 10 < th dose independent rect. 5 21
684 224.65 precipitation 0.1 10 < th dose dependent rect. 5 21
685 224.66 atmosphere 1000.0 90 > th dose independent rect. 20 12
734 224.79 atmosphere 1000.0 90 > th dose independent rect. 14 11
735 224.79 humidity 70.0 10 < th dose dependent rect. 13 1
738 224.81 temperature 25.0 1440 > th dose independent rect. 1 2
739 224.81 atmosphere 1000.0 10 > th dose independent rect. 20 13
753 224.87 atmosphere 995.0 30 > th dose dependent rect. 3 23
784 224.93 wind 9.0 10 < th dose dependent rect. 13 16
790 224.95 atmosphere 1015.0 10 < th dose dependent rect. 2 3
805 225.00 atmosphere 1000.0 1440 > th dose independent rect. 21 1
806 225.00 temperature 30.0 30 < th dose independent rect. 5 21
811 225.01 atmosphere 1000.0 30 < th dose independent rect. 7 18
812 225.01 temperature 30.0 30 < th dose dependent rect. 2 3
813 225.02 temperature 25.0 4320 < th dose independent rect. 23 4
879 225.16 temperature 25.0 90 > th dose independent rect. 1 3
880 225.16 wind 3.0 270 < th dose independent rect. 23 4
899 225.20 humidity 70.0 270 > th dose dependent rect. 23 4
911 225.24 temperature 25.0 4320 < th dose independent rect. 20 8
941 225.34 wind 1.0 270 > th dose independent rect. 24 3
951 225.39 wind 1.0 270 < th dose independent rect. 20 1
954 225.39 humidity 60.0 10 > th dose independent rect. 5 21
955 225.39 wind 9.0 90 < th dose independent rect. 3 23
972 225.41 atmosphere 995.0 10 > th dose dependent rect. 2 3
973 225.42 precipitation 0.1 1440 < th dose independent rect. 1 1
978 225.42 precipitation 0.1 1440 < th dose dependent rect. 1 1
991 225.45 wind 9.0 30 < th dose independent rect. 5 21
999 225.47 temperature 10.0 270 > th dose dependent rect. 18 15