Os07g0170200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HNH nuclease domain containing protein.
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Os07g0170200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HNH nuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.22 | 0.426 | 13.2 | -0.8 | 1.37 | -2.24 | -0.522 | 1.47 | -0.111 | 14.1 | 10 | 258 | 1.03 | 4.98 |
| 85.79 | 0.431 | 13.2 | -0.873 | 1.42 | -2.13 | -1.03 | -- | -0.1 | 14.4 | 9.993 | 243 | 1.17 | 4.98 |
| 83.04 | 0.424 | 13.2 | -0.801 | 1.37 | -2.22 | -- | 1.72 | -0.104 | 14.1 | 9.998 | 252 | 1.05 | 5 |
| 89.5 | 0.441 | 13.2 | -0.932 | 1.42 | -2.19 | -- | -- | -0.125 | 14.3 | 7.146 | 240 | 1.33 | 4.7 |
| 159.62 | 0.588 | 13.2 | -0.799 | -- | -2.72 | -- | 1.47 | -0.128 | -- | 54.73 | 236 | 0.525 | 5.53 |
| 178.01 | 0.625 | 13.3 | -1 | 2.81 | -- | -1.2 | -- | -0.216 | 16 | -- | -- | -- | -- |
| 182.17 | 0.632 | 13.3 | -1.01 | 2.8 | -- | -- | -- | -0.222 | 16 | -- | -- | -- | -- |
| 165.21 | 0.599 | 13.2 | -0.909 | -- | -2.9 | -- | -- | -0.113 | -- | 5.657 | 272 | 0.351 | 5.27 |
| 110.67 | 0.49 | 13.2 | -- | 1.43 | -2.18 | -- | -- | -0.046 | 14.3 | 10 | 222 | 1.47 | 4.6 |
| 609.59 | 1.15 | 13.3 | -1.13 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 209.29 | 0.677 | 13.2 | -- | 2.82 | -- | -- | -- | -0.109 | 16 | -- | -- | -- | -- |
| 186.82 | 0.637 | 13.2 | -- | -- | -2.86 | -- | -- | -0.0325 | -- | 9.83 | 261 | 0.35 | 5.42 |
| 643.21 | 1.18 | 13.2 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.87 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 2 | 82.88 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 3 | 82.94 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 7 | 83.96 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 11 | 84.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 13 | 84.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 15 | 84.43 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 16 | 84.58 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 17 | 84.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 20 | 85.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 21 | 85.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 23 | 85.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 24 | 85.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 27 | 85.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 28 | 85.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 32 | 85.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 38 | 85.12 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 39 | 85.12 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 41 | 85.12 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 42 | 85.12 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 44 | 85.12 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 45 | 85.12 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 51 | 85.19 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 4 |
| 52 | 85.19 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 55 | 85.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 57 | 85.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 73 | 85.43 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 75 | 85.63 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 81 | 85.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 116 | 87.77 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 126 | 89.35 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 128 | 89.61 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 141 | 90.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 150 | 90.72 | wind | 7.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 153 | 90.75 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 156 | 90.94 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 158 | 90.94 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 159 | 90.94 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 162 | 90.94 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 163 | 90.94 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 164 | 90.94 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 167 | 90.94 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 20 |
| 194 | 91.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 195 | 91.47 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 198 | 91.69 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 199 | 91.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 202 | 91.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 206 | 91.69 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 211 | 91.69 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 212 | 91.69 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 213 | 91.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 221 | 91.92 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 4 |
| 224 | 91.97 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 227 | 92.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 228 | 92.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 230 | 92.10 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 231 | 92.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 234 | 92.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 235 | 92.10 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 237 | 92.10 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 242 | 92.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 243 | 92.10 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 252 | 92.16 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 296 | 93.10 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 305 | 93.42 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 20 |
| 350 | 93.93 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 20 |
| 355 | 94.05 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 362 | 94.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 411 | 95.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 417 | 95.53 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 439 | 96.42 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 457 | 97.02 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 20 |
| 471 | 97.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 477 | 97.52 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 480 | 97.59 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 521 | 98.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 523 | 98.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 6 |
| 525 | 98.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 532 | 98.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 541 | 98.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 542 | 98.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 543 | 98.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 544 | 98.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 545 | 98.80 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 550 | 98.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 551 | 98.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 553 | 98.80 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 565 | 98.95 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 650 | 100.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 18 |
| 651 | 100.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 690 | 100.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 691 | 100.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 692 | 100.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 694 | 100.60 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 699 | 100.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 10 |
| 700 | 100.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 702 | 100.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 740 | 101.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 745 | 101.72 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 747 | 101.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 753 | 101.95 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 768 | 102.00 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 769 | 102.00 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 801 | 102.04 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 802 | 102.05 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 3 | 4 |
| 803 | 102.05 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 864 | 102.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 5 |
| 866 | 102.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 877 | 102.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 887 | 102.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 912 | 103.10 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 8 |
| 935 | 103.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 937 | 103.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 938 | 103.40 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 939 | 103.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 940 | 103.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 970 | 103.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 975 | 103.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 14 |