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Os07g0169600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.43 (0.0382) R2 : 0.468
β1 : -1.67 (0.16) R2dD : 0.179 R2D : -0.0398
β2 : 1.34 (0.0977) R2dC : 0.22 R2C : 0.238
β3 : -2.2 (0.174) R2dE : 0.276 R2E : 0.0855
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.205 (0.0868) R2dN8 : 0.0101 R2N8 : -0.0336
σ : 0.7
deviance : 226.04
__
_____
C
peak time of C : 5.41
E
wheather : temperature
threshold : 18.71
memory length : 2408
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.03 0.702 7.46 -1.79 1.33 -1.9 0.968 1.12 -0.234 5.36 18.92 2460 -- --
224.38 0.698 7.44 -1.66 1.32 -2.22 0.935 -- -0.214 5.37 18.71 2418 -- --
225.01 0.699 7.46 -1.77 1.34 -1.92 -- 0.996 -0.229 5.38 18.83 2402 -- --
226.04 0.7 7.43 -1.67 1.34 -2.2 -- -- -0.205 5.41 18.71 2408 -- --
314.17 0.826 7.49 -1.86 -- -2.46 -- 0.876 -0.236 -- 18.4 2564 -- --
303.37 0.817 7.33 -0.615 1.4 -- 0.662 -- 0.226 5.06 -- -- -- --
304.49 0.817 7.34 -0.616 1.4 -- -- -- 0.222 5.05 -- -- -- --
313.19 0.824 7.45 -1.72 -- -2.62 -- -- -0.199 -- 18.4 2564 -- --
275.94 0.774 7.35 -- 1.36 -1.78 -- -- 0.103 5.34 17.5 2387 -- --
408 0.944 7.35 -0.565 -- -- -- -- 0.258 -- -- -- -- --
314.49 0.83 7.32 -- 1.39 -- -- -- 0.291 5.06 -- -- -- --
364.44 0.889 7.38 -- -- -1.98 -- -- 0.134 -- 17.72 2550 -- --
416.43 0.952 7.34 -- -- -- -- -- 0.321 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 224.48 humidity 50 43200 < th dose independent rect. 15 3
2 224.83 humidity 50 43200 > th dose independent rect. 17 1
3 225.08 humidity 60 43200 < th dose dependent rect. 17 1
4 225.19 humidity 50 43200 < th dose independent rect. 17 1
5 225.19 humidity 50 43200 > th dose independent rect. 16 3
10 225.97 humidity 60 43200 < th dose independent rect. 17 6
21 226.41 humidity 50 43200 > th dose independent rect. 16 10
39 227.27 temperature 20 4320 < th dose dependent rect. 23 2
44 227.45 temperature 20 4320 < th dose dependent rect. 22 4
54 227.77 wind 7 43200 > th dose independent rect. 8 1
70 228.38 wind 7 43200 < th dose independent rect. 8 1
75 228.63 radiation 40 43200 < th dose dependent rect. 18 2
80 228.74 temperature 20 4320 < th dose dependent rect. 18 12
108 229.10 radiation 40 43200 < th dose dependent rect. 18 10
125 229.27 radiation 40 43200 < th dose dependent rect. 18 8
130 229.29 radiation 30 4320 < th dose independent rect. 16 16
149 229.47 temperature 20 4320 < th dose dependent sin 12 NA
215 230.10 radiation 10 14400 < th dose independent rect. 17 13
216 230.10 temperature 20 4320 < th dose dependent rect. 5 1
246 230.43 wind 1 43200 > th dose independent rect. 9 1
255 230.51 radiation 10 4320 > th dose dependent rect. 5 2
280 230.64 temperature 20 4320 < th dose dependent rect. 3 1
315 230.98 wind 5 43200 > th dose dependent rect. 8 1
352 231.33 temperature 20 4320 < th dose dependent rect. 3 3
388 231.56 radiation 30 4320 < th dose independent rect. 3 5
396 231.57 temperature 20 4320 < th dose dependent rect. 22 21
397 231.60 wind 7 43200 > th dose dependent rect. 20 12
401 231.62 wind 7 43200 > th dose dependent rect. 19 14
403 231.64 wind 7 43200 < th dose independent rect. 23 2
423 231.76 humidity 60 43200 > th dose independent sin 12 NA
429 231.77 radiation 30 4320 < th dose independent rect. 24 8
430 231.79 humidity 60 43200 < th dose independent sin 12 NA
434 231.81 wind 7 43200 > th dose dependent rect. 22 4
442 231.82 wind 5 43200 > th dose dependent rect. 23 2
473 231.98 radiation 30 4320 < th dose independent rect. 7 1
475 231.99 wind 9 43200 < th dose independent rect. 20 11
481 232.00 humidity 60 43200 > th dose independent rect. 18 20
491 232.03 humidity 70 43200 < th dose dependent sin 12 NA
498 232.10 wind 7 43200 > th dose independent rect. 20 13
505 232.12 temperature 20 4320 < th dose dependent no NA NA
515 232.20 wind 7 43200 > th dose independent rect. 23 1
520 232.21 wind 9 43200 < th dose independent rect. 20 7
525 232.24 wind 9 43200 > th dose independent rect. 20 8
529 232.29 wind 7 43200 < th dose independent rect. 20 13
552 232.38 wind 9 43200 > th dose independent rect. 20 6
553 232.40 wind 7 43200 > th dose independent rect. 23 3
558 232.41 wind 9 43200 > th dose independent rect. 20 11
581 232.58 wind 9 43200 < th dose independent rect. 20 5
585 232.61 temperature 20 4320 < th dose dependent rect. 5 23
605 232.70 temperature 20 4320 < th dose dependent rect. 3 23
609 232.72 humidity 70 43200 < th dose dependent rect. 15 20
621 232.83 humidity 60 43200 < th dose dependent rect. 8 1
657 233.03 humidity 50 43200 > th dose independent rect. 21 3
667 233.08 wind 3 43200 > th dose independent rect. 1 1
675 233.11 humidity 70 43200 < th dose dependent rect. 15 22
690 233.18 humidity 60 43200 < th dose dependent rect. 20 13
694 233.22 temperature 20 1440 < th dose independent rect. 5 2
702 233.27 humidity 50 43200 > th dose independent rect. 21 6
750 233.50 wind 7 43200 > th dose dependent sin 10 NA
810 233.74 wind 1 43200 > th dose independent rect. 12 1
821 233.78 atmosphere 1015 14400 < th dose independent rect. 12 10
839 233.84 humidity 60 43200 < th dose dependent rect. 21 1
888 234.02 atmosphere 1015 14400 < th dose independent rect. 13 1
890 234.03 atmosphere 1015 14400 > th dose independent rect. 12 1
897 234.04 humidity 80 14400 > th dose dependent rect. 12 1
898 234.05 atmosphere 1015 14400 < th dose independent rect. 16 5
909 234.08 humidity 60 43200 < th dose independent rect. 21 1
912 234.09 atmosphere 1015 14400 > th dose independent rect. 12 10
937 234.18 radiation 30 43200 < th dose independent rect. 7 1
952 234.23 humidity 70 43200 < th dose dependent rect. 12 23
957 234.26 humidity 60 43200 > th dose independent sin 6 NA
959 234.27 wind 9 43200 < th dose independent sin 11 NA
982 234.37 wind 1 43200 < th dose independent rect. 9 1
989 234.38 humidity 70 43200 < th dose dependent no NA NA
994 234.39 wind 1 43200 < th dose independent rect. 12 1
995 234.39 temperature 20 1440 < th dose independent rect. 22 1