Os07g0168600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-glucanase.
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Os07g0168600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-glucanase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 193.11 | 0.653 | 7.75 | -0.795 | 3.46 | 3.13 | 2.09 | 0.174 | 0.561 | 22.7 | 18.9 | 393 | 21.7 | -- |
| 192.91 | 0.647 | 7.75 | -0.773 | 3.37 | 2.98 | 1.91 | -- | 0.555 | 22.5 | 18.9 | 392 | 21.9 | -- |
| 196.21 | 0.652 | 7.77 | -1.04 | 2.85 | 2.31 | -- | -1.81 | 0.495 | 21.6 | 18.9 | 422 | 23.1 | -- |
| 206.37 | 0.669 | 7.76 | -0.841 | 3.16 | 2.55 | -- | -- | 0.562 | 21.3 | 18.9 | 407 | 23.4 | -- |
| 271.01 | 0.771 | 7.62 | -0.406 | -- | -1.14 | -- | -0.601 | 0.778 | -- | 14.1 | 2833 | 23.2 | -- |
| 262.02 | 0.759 | 7.65 | -0.386 | 1.16 | -- | 1.06 | -- | 0.771 | 20.1 | -- | -- | -- | -- |
| 265.26 | 0.763 | 7.65 | -0.414 | 1.17 | -- | -- | -- | 0.773 | 20 | -- | -- | -- | -- |
| 268.07 | 0.763 | 7.6 | -0.353 | -- | 1.37 | -- | -- | 0.854 | -- | 13.73 | 2872 | 23 | -- |
| 223.65 | 0.697 | 7.73 | -- | 2.9 | 2.18 | -- | -- | 0.68 | 21.1 | 18.9 | 398 | 23.6 | -- |
| 339.85 | 0.861 | 7.62 | -0.426 | -- | -- | -- | -- | 0.758 | -- | -- | -- | -- | -- |
| 269.77 | 0.768 | 7.64 | -- | 1.17 | -- | -- | -- | 0.819 | 19.9 | -- | -- | -- | -- |
| 267.34 | 0.762 | 7.6 | -- | -- | 1.39 | -- | -- | 0.859 | -- | 13.71 | 2871 | 22 | -- |
| 344.64 | 0.867 | 7.61 | -- | -- | -- | -- | -- | 0.805 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.37 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 6 | 203.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 7 | 203.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 9 | 204.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 15 | 205.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 16 | 205.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 25 | 206.31 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 6 |
| 26 | 206.31 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 37 | 207.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 47 | 207.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 78 | 210.07 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 87 | 210.44 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 103 | 211.31 | temperature | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 162 | 213.40 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 212 | 214.26 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 4 |
| 222 | 214.39 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 239 | 214.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 277 | 215.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 295 | 215.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 299 | 215.92 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 7 |
| 322 | 216.20 | temperature | 20 | 270 | < th | dose independent | sin | 5 | NA |
| 415 | 217.90 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 14 |
| 425 | 218.01 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 465 | 218.40 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 562 | 219.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 601 | 219.80 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 604 | 219.82 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 606 | 219.84 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 7 |
| 637 | 220.12 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 4 |
| 685 | 220.60 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 10 |
| 770 | 221.15 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 20 |
| 800 | 221.40 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 20 |
| 839 | 221.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 886 | 222.07 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 1 |
| 902 | 222.18 | humidity | 90 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 978 | 222.68 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 1 |