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Os07g0168000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polyribonucleotide phophorylase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0215) R2 : 0.671
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.62 (0.0555) R2dC : 0.622 R2C : 0.61
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.364 (0.0453) R2dN8 : 0.0603 R2N8 : 0.0486
σ : 0.406
deviance : 75.28
__
_____
C
peak time of C : 19.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.16 0.373 11.3 -0.231 1.64 0.826 0.0851 2.35 -0.426 20 30.93 155 -- --
68.55 0.386 11.3 -0.257 1.58 0.633 -0.264 -- -0.438 20.1 25.49 256 -- --
63.16 0.37 11.3 -0.236 1.64 0.817 -- 2.27 -0.426 20 30.05 155 -- --
66.75 0.381 11.3 -0.266 1.65 0.707 -- -- -0.429 20.5 4.533 186 -- --
121.11 0.513 11.2 -0.105 -- 1.69 -- 1.32 -0.447 -- -1.051e-05 852 -- --
73.77 0.403 11.3 -0.239 1.62 -- -0.125 -- -0.39 19.5 -- -- -- --
73.82 0.402 11.3 -0.236 1.62 -- -- -- -0.39 19.5 -- -- -- --
114.33 0.498 11.3 -0.372 -- 1.66 -- -- -0.598 -- -14.84 850 -- --
68.39 0.385 11.3 -- 1.65 0.671 -- -- -0.402 20.4 4.92 186 -- --
214.68 0.685 11.2 -0.26 -- -- -- -- -0.416 -- -- -- -- --
75.28 0.406 11.3 -- 1.62 -- -- -- -0.364 19.5 -- -- -- --
117.97 0.506 11.3 -- -- 1.64 -- -- -0.554 -- -1.979 848 -- --
216.46 0.687 11.2 -- -- -- -- -- -0.387 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.41 temperature 10.0 270 > th dose dependent rect. 7 8
5 55.36 temperature 25.0 270 > th dose independent rect. 8 7
32 57.15 wind 9.0 270 < th dose independent rect. 7 10
37 57.23 temperature 20.0 10 > th dose dependent rect. 9 8
41 57.27 wind 7.0 270 < th dose independent rect. 7 20
57 57.68 radiation 20.0 270 < th dose dependent rect. 3 7
61 57.72 temperature 15.0 270 > th dose independent rect. 17 14
68 57.81 radiation 20.0 270 < th dose independent rect. 17 14
73 57.89 temperature 10.0 270 > th dose independent rect. 7 10
74 57.89 atmosphere 1015.0 270 < th dose independent rect. 7 10
77 57.91 atmosphere 995.0 270 > th dose independent rect. 17 14
89 58.04 precipitation 0.1 270 < th dose independent rect. 7 10
90 58.04 precipitation 0.1 270 < th dose dependent rect. 7 10
96 58.12 radiation 10.0 270 < th dose independent rect. 3 6
107 58.28 wind 9.0 270 < th dose independent rect. 17 14
130 58.56 temperature 10.0 270 > th dose dependent rect. 3 4
146 58.74 radiation 40.0 270 < th dose dependent rect. 17 14
147 58.77 temperature 10.0 270 > th dose dependent rect. 22 15
154 58.93 precipitation 0.1 270 < th dose independent rect. 17 14
156 58.93 precipitation 0.1 270 < th dose dependent rect. 17 14
166 59.00 humidity 50.0 270 > th dose independent rect. 17 14
175 59.07 wind 5.0 270 < th dose independent rect. 21 6
176 59.08 humidity 70.0 270 > th dose independent rect. 3 4
178 59.10 wind 7.0 270 < th dose independent rect. 3 4
181 59.11 temperature 25.0 270 > th dose independent rect. 23 16
186 59.12 temperature 10.0 270 > th dose independent rect. 3 4
188 59.12 temperature 30.0 270 < th dose independent rect. 3 4
189 59.12 humidity 50.0 270 > th dose independent rect. 3 4
191 59.12 atmosphere 995.0 270 > th dose independent rect. 3 4
192 59.12 atmosphere 1015.0 270 < th dose independent rect. 3 4
195 59.12 temperature 10.0 270 > th dose independent rect. 7 20
201 59.19 wind 1.0 270 > th dose independent rect. 3 4
202 59.19 precipitation 0.1 270 < th dose independent rect. 3 4
206 59.19 precipitation 0.1 270 < th dose dependent rect. 3 4
212 59.22 temperature 15.0 270 > th dose independent rect. 3 18
216 59.28 precipitation 0.1 270 < th dose independent rect. 7 20
220 59.28 precipitation 0.1 270 < th dose dependent rect. 7 20
229 59.30 temperature 10.0 90 > th dose dependent rect. 9 19
263 59.51 atmosphere 1000.0 10 > th dose independent rect. 6 16
270 59.57 wind 9.0 270 < th dose dependent rect. 7 20
277 59.62 radiation 40.0 270 < th dose dependent rect. 3 18
297 59.76 wind 1.0 270 > th dose independent rect. 7 10
305 59.84 temperature 25.0 270 > th dose dependent rect. 22 15
312 59.88 atmosphere 1015.0 270 < th dose independent rect. 3 18
326 59.94 radiation 1.0 270 > th dose independent rect. 7 9
343 60.00 temperature 10.0 270 > th dose independent rect. 21 6
344 60.00 temperature 30.0 270 < th dose independent rect. 21 6
345 60.00 humidity 50.0 270 > th dose independent rect. 21 6
348 60.00 atmosphere 995.0 270 > th dose independent rect. 21 6
349 60.00 radiation 1.0 270 < th dose independent rect. 21 6
355 60.00 radiation 1.0 270 < th dose dependent rect. 21 6
366 60.04 precipitation 0.1 270 < th dose independent rect. 21 6
368 60.04 radiation 40.0 270 < th dose independent rect. 10 22
371 60.04 precipitation 0.1 270 < th dose dependent rect. 21 6
372 60.04 wind 9.0 270 < th dose dependent rect. 20 7
385 60.10 temperature 15.0 90 > th dose independent rect. 7 23
425 60.15 temperature 25.0 270 < th dose independent rect. 3 11
439 60.19 atmosphere 995.0 270 > th dose independent rect. 7 9
467 60.28 wind 1.0 90 > th dose independent rect. 6 1
474 60.29 radiation 40.0 270 < th dose dependent rect. 2 20
487 60.33 radiation 40.0 90 < th dose dependent rect. 5 18
501 60.36 temperature 10.0 10 > th dose dependent rect. 9 21
528 60.41 humidity 70.0 90 > th dose independent rect. 6 1
531 60.41 radiation 20.0 90 < th dose independent rect. 5 18
532 60.42 temperature 25.0 270 > th dose independent sin 3 NA
554 60.48 precipitation 0.1 270 < th dose independent rect. 3 18
555 60.48 precipitation 0.1 270 < th dose dependent rect. 3 18
564 60.51 radiation 20.0 90 < th dose independent rect. 6 1
577 60.53 wind 5.0 90 < th dose independent rect. 6 1
583 60.54 temperature 10.0 90 > th dose independent rect. 6 1
585 60.54 temperature 30.0 90 < th dose independent rect. 6 1
586 60.54 humidity 50.0 90 > th dose independent rect. 6 1
588 60.54 atmosphere 995.0 90 > th dose independent rect. 6 1
589 60.54 atmosphere 1015.0 90 < th dose independent rect. 6 1
599 60.56 precipitation 0.1 90 < th dose independent rect. 6 1
602 60.56 precipitation 0.1 90 < th dose dependent rect. 6 1
606 60.58 radiation 40.0 10 < th dose dependent rect. 6 3
607 60.58 humidity 50.0 270 > th dose dependent rect. 3 4
610 60.59 atmosphere 995.0 270 > th dose independent rect. 3 17
627 60.64 wind 9.0 270 < th dose dependent rect. 3 4
635 60.67 radiation 10.0 270 < th dose independent rect. 3 18
636 60.67 radiation 40.0 270 < th dose independent rect. 3 18
653 60.72 atmosphere 995.0 270 > th dose dependent rect. 3 4
654 60.72 radiation 40.0 10 < th dose dependent rect. 6 16
678 60.80 temperature 15.0 4320 > th dose independent rect. 7 2
681 60.81 radiation 40.0 90 < th dose dependent rect. 6 1
692 60.82 temperature 10.0 270 > th dose dependent rect. 17 14
699 60.83 humidity 50.0 90 > th dose dependent rect. 6 1
701 60.84 temperature 25.0 90 > th dose dependent sin 4 NA
702 60.84 temperature 10.0 90 > th dose dependent rect. 6 1
706 60.85 radiation 20.0 10 < th dose dependent rect. 22 8
716 60.88 humidity 90.0 270 < th dose independent rect. 7 8
717 60.88 wind 9.0 90 < th dose dependent rect. 6 1
729 60.90 radiation 1.0 90 < th dose dependent rect. 22 9
734 60.91 radiation 40.0 270 < th dose independent rect. 12 10
735 60.91 radiation 40.0 90 < th dose independent rect. 5 17
737 60.91 temperature 25.0 270 > th dose dependent sin 6 NA
749 60.94 radiation 1.0 90 > th dose independent rect. 18 14
755 60.95 wind 7.0 10 < th dose dependent rect. 6 3
775 60.98 wind 5.0 10 < th dose independent rect. 6 2
805 61.01 wind 9.0 270 < th dose independent rect. 3 17
807 61.01 temperature 10.0 10 > th dose dependent rect. 19 14
819 61.03 radiation 30.0 10 < th dose independent rect. 6 2
822 61.03 radiation 1.0 90 < th dose independent rect. 22 8
825 61.03 humidity 50.0 270 > th dose dependent rect. 20 7
837 61.06 wind 5.0 10 < th dose independent rect. 22 8
840 61.06 radiation 40.0 270 < th dose independent rect. 1 22
882 61.17 radiation 1.0 90 > th dose independent rect. 5 3
915 61.20 radiation 40.0 270 < th dose independent rect. 2 20
919 61.21 humidity 70.0 90 > th dose independent rect. 4 7
940 61.24 temperature 10.0 10 > th dose dependent rect. 6 2
945 61.25 wind 1.0 270 > th dose independent rect. 21 6
957 61.28 radiation 1.0 90 > th dose independent rect. 6 1
960 61.28 temperature 10.0 10 > th dose independent rect. 6 2
962 61.28 temperature 30.0 10 < th dose independent rect. 6 2
963 61.28 humidity 50.0 10 > th dose independent rect. 6 2
965 61.28 atmosphere 995.0 10 > th dose independent rect. 6 2
966 61.28 atmosphere 1015.0 10 < th dose independent rect. 6 2
969 61.28 temperature 10.0 10 > th dose independent rect. 8 22
992 61.30 temperature 10.0 90 > th dose independent rect. 5 17
993 61.30 atmosphere 1015.0 90 < th dose independent rect. 5 17