Os07g0167500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0167500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.17 | 0.536 | 10.8 | 1.34 | 0.519 | 0.41 | -1.64 | 6 | 0.407 | 9.83 | 1.253 | 1412 | -- | -- |
| 146.95 | 0.565 | 10.7 | 2.39 | 0.413 | 0.506 | -1.33 | -- | 0.718 | 11.2 | 22.24 | 18445 | -- | -- |
| 133.71 | 0.539 | 10.8 | 1.25 | 0.596 | 0.353 | -- | 6.69 | 0.41 | 10.4 | 1.57 | 1473 | -- | -- |
| 145.17 | 0.561 | 10.6 | 1.99 | 0.555 | 0.688 | -- | -- | 0.831 | 10.9 | 60 | 19908 | -- | -- |
| 150.53 | 0.571 | 10.8 | 1.26 | -- | -0.599 | -- | 5.52 | 0.326 | -- | 2.41 | 1516 | -- | -- |
| 158.68 | 0.591 | 10.7 | 2.18 | 0.582 | -- | -1.2 | -- | 0.602 | 10.2 | -- | -- | -- | -- |
| 163.88 | 0.599 | 10.7 | 2.13 | 0.589 | -- | -- | -- | 0.602 | 10.9 | -- | -- | -- | -- |
| 162.37 | 0.593 | 10.7 | 2 | -- | 0.787 | -- | -- | 0.864 | -- | 214.4 | 19804 | -- | -- |
| 237.98 | 0.718 | 10.7 | -- | 0.575 | 1.18 | -- | -- | 0.632 | 10.9 | 88.58 | 29193 | -- | -- |
| 185.38 | 0.636 | 10.7 | 2.12 | -- | -- | -- | -- | 0.598 | -- | -- | -- | -- | -- |
| 283.8 | 0.788 | 10.8 | -- | 0.573 | -- | -- | -- | 0.365 | 10.6 | -- | -- | -- | -- |
| 254.92 | 0.744 | 10.7 | -- | -- | 1.19 | -- | -- | 0.664 | -- | 244.1 | 28463 | -- | -- |
| 304 | 0.814 | 10.8 | -- | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.86 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 13 |
| 2 | 125.92 | temperature | 15 | 270 | > th | dose independent | rect. | 2 | 23 |
| 5 | 127.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 7 | 127.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 8 | 127.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 14 | 127.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 21 | 128.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 25 | 128.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 32 | 129.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 33 | 129.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 35 | 129.33 | humidity | 90 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 40 | 129.41 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 41 | 129.41 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 5 |
| 43 | 129.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 44 | 129.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 46 | 129.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 47 | 129.59 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 48 | 129.66 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 62 | 129.99 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 63 | 129.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 12 |
| 65 | 130.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 69 | 130.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 74 | 130.06 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 77 | 130.07 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 80 | 130.13 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 89 | 130.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 94 | 130.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 115 | 130.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 166 | 130.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 170 | 130.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 188 | 130.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 192 | 130.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 193 | 130.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 198 | 130.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 210 | 130.96 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 225 | 130.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 258 | 131.02 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 260 | 131.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 320 | 131.06 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 349 | 131.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 351 | 131.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 374 | 131.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 375 | 131.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 388 | 131.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 423 | 131.44 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 452 | 131.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 460 | 131.49 | temperature | 15 | 270 | > th | dose independent | rect. | 13 | 11 |
| 479 | 131.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 488 | 131.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 590 | 132.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 613 | 132.52 | humidity | 90 | 30 | < th | dose independent | rect. | 20 | 15 |
| 614 | 132.53 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 623 | 132.66 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 626 | 132.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 635 | 132.77 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 702 | 132.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 705 | 132.93 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 717 | 133.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 718 | 133.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 746 | 133.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 756 | 133.36 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 837 | 133.95 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 15 |
| 845 | 133.98 | temperature | 15 | 720 | > th | dose independent | rect. | 11 | 8 |
| 885 | 134.42 | humidity | 90 | 30 | > th | dose dependent | sin | 9 | NA |
| 945 | 134.97 | humidity | 90 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 969 | 135.18 | humidity | 90 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 974 | 135.20 | humidity | 90 | 30 | > th | dose dependent | rect. | 20 | 10 |