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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0166700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0435) R2 : 0.136
β1 : -0.263 (0.138) R2dD : 0.00801 R2D : 0.00901
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.74 (7.25) R2dE : 0.0332 R2E : -0.166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -23.7 (21.4) R2dD*E : 0.286 R2D*E : 0.0948
γ1 : 0.065 (0.0763) R2dN8 : 0.00185 R2N8 : -1.13e-05
σ : 0.666
deviance : 204.61
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.832
memory length : 88
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.96
open length of G : 2.66

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
204.1 0.671 2.9 -0.281 0.0633 -3.53 0.654 -25.9 0.0684 6.95 1.037 88 8.08 2.65
238.29 0.719 2.96 -0.414 0.199 -2.4 0.84 -- -0.0461 7.2 2.83 7 8.97 2.97
204.34 0.666 2.9 -0.267 0.0708 -3.03 -- -24.5 0.0631 5.67 0.8131 88 7.95 2.61
232.92 0.715 2.94 -0.335 0.111 -0.388 -- -- 0.0223 8 4.443 9 9.14 3.22
204.61 0.666 2.9 -0.263 -- -2.74 -- -23.7 0.065 -- 0.832 88 7.96 2.66
232.87 0.715 2.94 -0.332 0.0933 -- 0.45 -- 0.0263 6.06 -- -- -- --
233.22 0.715 2.94 -0.326 0.107 -- -- -- 0.0254 7.86 -- -- -- --
233.56 0.715 2.94 -0.33 -- -0.27 -- -- 0.0233 -- 5.26 6 9.92 3.31
235.49 0.719 2.93 -- 0.117 -0.282 -- -- 0.0562 8.39 8.943 5 9.33 3.8
233.84 0.715 2.94 -0.325 -- -- -- -- 0.0268 -- -- -- -- --
236.02 0.719 2.93 -- 0.105 -- -- -- 0.0617 8.08 -- -- -- --
236.09 0.718 2.93 -- -- -0.225 -- -- 0.0559 -- 8.941 6 9.34 4.67
236.63 0.718 2.93 -- -- -- -- -- 0.0629 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.62 radiation 1 90 < th dose independent rect. 8 3
2 205.62 radiation 1 90 < th dose dependent rect. 8 3
15 218.90 humidity 90 90 > th dose independent rect. 18 3
16 219.13 humidity 90 90 > th dose dependent rect. 18 3
17 219.22 wind 3 30 < th dose dependent rect. 20 1
23 220.48 temperature 20 90 < th dose dependent rect. 19 1
27 220.52 temperature 20 90 < th dose independent rect. 19 1
57 221.71 humidity 90 30 > th dose independent rect. 11 11
70 222.00 humidity 50 720 > th dose dependent rect. 9 2
74 222.15 humidity 90 30 > th dose dependent rect. 9 11
78 222.17 humidity 90 30 > th dose dependent rect. 11 9
86 222.29 humidity 50 1440 > th dose independent rect. 23 11
89 222.44 humidity 50 30 > th dose dependent rect. 19 17
93 222.57 humidity 50 720 > th dose dependent rect. 8 4
102 222.78 humidity 50 270 > th dose dependent rect. 6 14
105 223.03 humidity 50 270 > th dose dependent rect. 8 12
118 223.21 wind 9 30 < th dose independent rect. 3 23
134 223.62 wind 3 10 < th dose independent rect. 20 1
146 223.74 wind 1 10 > th dose independent rect. 22 21
151 223.78 humidity 60 720 > th dose independent rect. 8 3
167 223.87 wind 9 10 > th dose dependent rect. 11 1
168 223.87 wind 9 90 > th dose dependent rect. 11 1
170 223.89 humidity 90 270 > th dose dependent rect. 10 10
171 223.90 wind 9 30 > th dose independent rect. 11 1
173 223.90 wind 9 30 > th dose independent rect. 1 11
197 224.00 temperature 30 90 < th dose dependent rect. 19 2
201 224.01 humidity 50 270 > th dose dependent rect. 15 21
270 224.19 temperature 30 90 < th dose dependent rect. 8 13
271 224.20 wind 1 10 > th dose independent rect. 22 11
277 224.21 temperature 20 90 < th dose dependent rect. 11 10
285 224.26 temperature 20 270 < th dose dependent rect. 11 8
324 224.41 humidity 60 270 > th dose independent rect. 23 12
328 224.42 humidity 80 270 > th dose independent rect. 6 14
331 224.45 temperature 30 720 < th dose dependent rect. 9 1
335 224.47 humidity 70 270 > th dose independent rect. 15 20
344 224.50 temperature 20 10 < th dose dependent rect. 12 9
348 224.51 radiation 1 43200 < th dose dependent rect. 3 1
383 224.59 humidity 60 10 > th dose independent rect. 19 17
395 224.64 wind 9 90 < th dose independent rect. 20 23
407 224.67 wind 7 30 < th dose independent rect. 22 21
416 224.71 temperature 30 720 < th dose dependent rect. 8 3
434 224.78 humidity 90 270 < th dose independent rect. 10 12
453 224.85 humidity 50 10 > th dose independent rect. 9 13
467 224.90 humidity 90 30 > th dose independent sin 19 NA
468 224.90 atmosphere 1010 30 < th dose independent rect. 22 21
491 224.95 humidity 60 270 > th dose independent rect. 6 14
516 225.05 atmosphere 1005 90 > th dose independent rect. 19 1
521 225.06 wind 9 30 < th dose independent sin 6 NA
536 225.12 wind 9 30 > th dose independent sin 6 NA
578 225.19 temperature 30 270 < th dose dependent rect. 6 14
580 225.20 wind 9 10 > th dose dependent sin 7 NA
595 225.24 temperature 25 270 < th dose independent rect. 6 14
619 225.30 temperature 25 720 < th dose independent rect. 9 1
620 225.30 humidity 60 720 > th dose independent rect. 1 8
669 225.40 humidity 50 720 > th dose independent rect. 19 16
676 225.42 atmosphere 995 720 > th dose dependent rect. 24 3
695 225.45 temperature 20 10 < th dose dependent rect. 5 17
709 225.48 humidity 60 720 < th dose dependent rect. 18 17
718 225.51 temperature 20 90 < th dose independent rect. 10 11
737 225.54 humidity 50 30 > th dose independent sin 8 NA
754 225.57 radiation 10 270 < th dose dependent rect. 8 12
755 225.57 humidity 80 270 < th dose dependent rect. 14 22
777 225.59 humidity 50 270 > th dose dependent rect. 5 22
812 225.64 humidity 90 270 < th dose dependent rect. 8 15
813 225.64 humidity 60 270 < th dose dependent rect. 16 19
814 225.65 wind 9 1440 < th dose independent rect. 3 1
815 225.65 temperature 10 1440 > th dose independent rect. 3 1
818 225.65 temperature 30 1440 < th dose independent rect. 3 1
822 225.65 humidity 50 1440 > th dose independent rect. 3 1
831 225.65 atmosphere 995 1440 > th dose independent rect. 3 1
832 225.65 radiation 1 1440 < th dose independent rect. 3 1
853 225.65 humidity 50 90 > th dose independent rect. 8 13
856 225.65 temperature 10 1440 > th dose independent rect. 4 23
859 225.65 atmosphere 1010 30 < th dose independent rect. 3 23
861 225.65 radiation 1 1440 < th dose dependent rect. 3 1
869 225.65 humidity 60 270 < th dose dependent rect. 9 2
875 225.66 radiation 1 270 < th dose independent rect. 8 12
907 225.68 humidity 60 270 < th dose dependent sin 10 NA
932 225.71 wind 1 10 > th dose independent rect. 9 13
950 225.72 radiation 40 720 < th dose dependent rect. 9 1
956 225.74 wind 1 10 > th dose independent rect. 22 8
960 225.74 humidity 50 10 > th dose independent rect. 6 22