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Os07g0166600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0219) R2 : 0.739
β1 : 1.57 (0.0801) R2dD : 0.228 R2D : 0.167
β2 : 1.71 (0.0564) R2dC : 0.528 R2C : 0.491
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.412 (0.0467) R2dN8 : 0.0597 R2N8 : -0.00219
σ : 0.411
deviance : 77.09
__
_____
C
peak time of C : 16.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.8 0.389 13.1 1.61 1.6 -0.472 0.334 0.108 0.441 17.8 10 10 -- --
68.5 0.388 13.1 1.6 1.61 -0.491 0.355 -- 0.438 17.8 10 10 -- --
68.67 0.389 13.1 1.61 1.61 -0.489 -- 0.145 0.442 17.8 10 10 -- --
68.81 0.389 13.1 1.6 1.61 -0.488 -- -- 0.439 17.8 10 10 -- --
115.6 0.501 13 1.98 -- -1.29 -- 1.03 0.697 -- 1.318 537 -- --
76.89 0.411 13.1 1.57 1.71 -- 0.278 -- 0.411 16.7 -- -- -- --
77.09 0.411 13.1 1.57 1.71 -- -- -- 0.412 16.7 -- -- -- --
82.08 0.422 13.1 1.46 -- -1.78 -- -- 0.304 -- 0.2 596 -- --
132.29 0.536 13.2 -- 1.56 -0.421 -- -- 0.245 17.5 16.54 19 -- --
232.87 0.713 13.1 1.5 -- -- -- -- 0.367 -- -- -- -- --
141.93 0.557 13.2 -- 1.68 -- -- -- 0.237 16.7 -- -- -- --
133.72 0.539 13.1 -- -- -1.78 -- -- 0.281 -- 9.582e-08 590 -- --
292.48 0.798 13.2 -- -- -- -- -- 0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.67 wind 5.0 270 < th dose independent rect. 3 2
2 57.65 wind 5.0 90 < th dose independent rect. 3 5
4 57.87 precipitation 0.1 270 < th dose independent rect. 3 2
5 57.87 precipitation 0.1 270 < th dose dependent rect. 3 2
10 58.72 radiation 1.0 270 < th dose dependent rect. 3 2
11 58.74 wind 9.0 270 < th dose independent rect. 5 22
13 58.75 temperature 10.0 270 > th dose independent rect. 3 2
15 58.75 temperature 30.0 270 < th dose independent rect. 3 2
16 58.75 humidity 50.0 270 > th dose independent rect. 3 2
19 58.75 atmosphere 995.0 270 > th dose independent rect. 3 2
20 58.75 atmosphere 1010.0 270 < th dose independent rect. 3 2
22 58.75 radiation 20.0 270 < th dose independent rect. 3 2
25 58.75 precipitation 0.1 90 < th dose independent rect. 3 5
26 58.75 temperature 10.0 270 > th dose independent rect. 5 22
27 58.75 precipitation 0.1 90 < th dose dependent rect. 3 5
28 58.76 atmosphere 1000.0 90 > th dose dependent rect. 3 5
29 58.77 radiation 40.0 270 < th dose dependent rect. 3 2
34 58.84 radiation 1.0 270 < th dose independent rect. 3 2
36 58.96 wind 9.0 270 < th dose dependent rect. 3 2
38 59.03 atmosphere 1000.0 270 > th dose dependent rect. 3 2
39 59.14 wind 1.0 270 > th dose independent rect. 3 2
40 59.18 wind 9.0 90 < th dose dependent rect. 3 5
41 59.21 wind 9.0 90 < th dose independent rect. 8 19
43 59.22 temperature 10.0 90 > th dose independent rect. 3 5
45 59.22 temperature 30.0 90 < th dose independent rect. 3 5
46 59.22 humidity 50.0 90 > th dose independent rect. 3 5
48 59.22 atmosphere 995.0 90 > th dose independent rect. 3 5
49 59.22 atmosphere 1015.0 90 < th dose independent rect. 3 5
50 59.22 temperature 10.0 90 > th dose independent rect. 8 19
51 59.28 radiation 40.0 90 < th dose independent rect. 3 5
58 59.47 precipitation 0.1 90 < th dose independent rect. 8 19
59 59.47 precipitation 0.1 90 < th dose dependent rect. 8 19
61 59.50 atmosphere 1005.0 270 > th dose independent rect. 3 2
67 59.62 atmosphere 1005.0 90 > th dose independent rect. 3 5
71 59.75 atmosphere 1000.0 10 > th dose dependent rect. 3 5
78 59.91 wind 9.0 270 < th dose independent rect. 6 20
83 59.97 wind 5.0 10 < th dose independent rect. 3 6
103 60.02 temperature 10.0 270 > th dose independent rect. 6 20
106 60.07 radiation 40.0 270 < th dose dependent rect. 2 4
110 60.10 radiation 10.0 270 < th dose independent rect. 1 6
115 60.14 temperature 10.0 270 > th dose dependent rect. 3 2
144 60.31 radiation 30.0 270 < th dose dependent rect. 1 6
151 60.35 atmosphere 995.0 90 > th dose independent rect. 8 19
152 60.36 precipitation 0.1 270 < th dose independent rect. 5 22
153 60.36 precipitation 0.1 270 < th dose dependent rect. 5 22
157 60.42 temperature 10.0 90 > th dose dependent rect. 3 5
158 60.45 wind 1.0 270 > th dose independent rect. 1 5
159 60.46 precipitation 0.1 10 < th dose independent rect. 3 6
161 60.46 precipitation 0.1 10 < th dose dependent rect. 3 6
203 60.64 wind 9.0 10 < th dose dependent rect. 3 6
205 60.65 precipitation 0.1 270 < th dose independent rect. 6 20
206 60.65 humidity 50.0 270 > th dose dependent rect. 3 2
210 60.65 precipitation 0.1 270 < th dose dependent rect. 6 20
217 60.71 radiation 40.0 90 < th dose dependent rect. 3 6
227 60.84 temperature 15.0 270 > th dose independent rect. 13 17
257 61.06 humidity 50.0 90 > th dose independent rect. 8 19
260 61.09 precipitation 0.1 270 < th dose independent rect. 13 17
262 61.09 precipitation 0.1 270 < th dose dependent rect. 13 17
275 61.17 atmosphere 1005.0 10 > th dose independent rect. 3 5
296 61.21 precipitation 0.1 270 < th dose independent rect. 2 15
298 61.21 precipitation 0.1 270 < th dose dependent rect. 2 15
303 61.24 temperature 10.0 10 > th dose independent rect. 3 6
305 61.24 temperature 30.0 10 < th dose independent rect. 3 6
306 61.24 humidity 50.0 10 > th dose independent rect. 3 6
309 61.24 atmosphere 995.0 10 > th dose independent rect. 3 6
310 61.24 atmosphere 1015.0 10 < th dose independent rect. 3 6
311 61.24 temperature 10.0 10 > th dose independent rect. 9 18
314 61.25 precipitation 0.1 10 < th dose independent rect. 9 18
318 61.25 precipitation 0.1 10 < th dose dependent rect. 9 18
323 61.27 wind 9.0 10 < th dose independent rect. 9 18
344 61.34 wind 9.0 270 < th dose independent rect. 6 7
350 61.36 temperature 10.0 270 > th dose independent rect. 6 7
351 61.36 atmosphere 995.0 270 > th dose independent rect. 6 7
352 61.36 atmosphere 1015.0 270 < th dose independent rect. 6 7
353 61.36 precipitation 0.1 270 < th dose independent rect. 6 7
356 61.36 precipitation 0.1 270 < th dose dependent rect. 6 7
389 61.42 humidity 50.0 270 > th dose independent rect. 6 7
448 61.56 radiation 10.0 270 < th dose independent rect. 17 9
454 61.58 radiation 40.0 10 < th dose independent rect. 3 6
460 61.61 wind 9.0 270 < th dose independent rect. 13 17
465 61.63 atmosphere 995.0 270 > th dose independent rect. 6 20
473 61.67 radiation 30.0 270 < th dose dependent rect. 17 9
475 61.68 radiation 40.0 270 < th dose independent rect. 13 17
501 61.73 humidity 50.0 270 > th dose dependent rect. 18 8
506 61.75 radiation 40.0 90 < th dose independent rect. 13 19
521 61.78 wind 9.0 270 < th dose independent rect. 17 9
523 61.79 humidity 50.0 270 > th dose independent rect. 17 9
530 61.81 temperature 10.0 270 > th dose independent rect. 17 9
534 61.81 temperature 10.0 270 > th dose independent rect. 2 15
535 61.81 atmosphere 1015.0 270 < th dose independent rect. 2 15
566 61.85 temperature 10.0 10 > th dose dependent rect. 3 5
592 61.92 atmosphere 995.0 270 > th dose independent rect. 18 8
609 61.96 precipitation 0.1 90 < th dose independent rect. 8 7
612 61.96 precipitation 0.1 90 < th dose dependent rect. 8 7
637 61.99 atmosphere 1015.0 270 < th dose independent rect. 13 17
638 61.99 humidity 50.0 270 > th dose independent rect. 6 20
659 62.06 temperature 10.0 90 > th dose independent rect. 8 7
660 62.06 atmosphere 1015.0 90 < th dose independent rect. 8 7
666 62.07 radiation 40.0 90 < th dose dependent rect. 3 8
687 62.11 temperature 30.0 270 < th dose dependent rect. 3 2
695 62.13 atmosphere 995.0 10 > th dose independent rect. 9 18
719 62.18 atmosphere 995.0 90 > th dose independent rect. 8 7
723 62.19 wind 9.0 270 < th dose independent rect. 2 15
724 62.19 temperature 15.0 10 > th dose independent rect. 15 17
731 62.21 wind 9.0 90 < th dose independent rect. 8 7
738 62.22 atmosphere 1015.0 90 < th dose independent rect. 15 17
750 62.25 radiation 1.0 90 > th dose independent rect. 8 7
758 62.26 temperature 15.0 270 > th dose independent rect. 11 10
760 62.26 wind 1.0 270 > th dose independent rect. 13 17
765 62.27 precipitation 0.1 270 < th dose independent rect. 17 9
767 62.27 precipitation 0.1 270 < th dose dependent rect. 17 9
782 62.30 wind 9.0 1440 < th dose independent rect. 4 5
783 62.30 temperature 10.0 1440 > th dose independent rect. 4 5
786 62.30 humidity 50.0 1440 > th dose independent rect. 4 5
788 62.30 atmosphere 995.0 1440 > th dose independent rect. 4 5
789 62.30 atmosphere 1015.0 1440 < th dose independent rect. 4 5
798 62.30 temperature 30.0 270 < th dose independent rect. 18 8
800 62.30 temperature 10.0 1440 > th dose independent rect. 9 19
819 62.34 radiation 1.0 270 < th dose independent rect. 2 10
851 62.39 radiation 40.0 90 < th dose independent rect. 3 16
865 62.41 wind 1.0 90 > th dose independent rect. 8 7
872 62.42 atmosphere 1015.0 270 < th dose independent rect. 11 10
878 62.43 humidity 50.0 270 > th dose independent rect. 20 15
889 62.46 radiation 1.0 270 < th dose dependent rect. 2 15
912 62.51 atmosphere 995.0 270 > th dose independent rect. 13 17
956 62.54 temperature 10.0 270 > th dose independent rect. 20 15
957 62.54 atmosphere 995.0 270 > th dose independent rect. 20 15
962 62.56 temperature 15.0 270 > th dose independent rect. 11 20
982 62.61 radiation 1.0 270 > th dose independent rect. 6 7
990 62.62 wind 9.0 270 < th dose independent rect. 20 15