Os07g0166100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Membrane attack complex component/perforin/complement C9 family protein.
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Os07g0166100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Membrane attack complex component/perforin/complement C9 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.55 | 0.166 | 10.4 | 0.601 | 0.0812 | -0.351 | -0.523 | -1.09 | 0.0938 | 20.3 | 30.64 | 42 | -- | -- |
| 13.7 | 0.172 | 10.4 | 0.409 | 0.0816 | -0.447 | -0.626 | -- | 0.0454 | 21.8 | 44.29 | 31 | -- | -- |
| 13.26 | 0.171 | 10.4 | 0.638 | 0.0951 | -0.367 | -- | -1.22 | 0.0948 | 21.5 | 30.4 | 41 | -- | -- |
| 15.21 | 0.182 | 10.4 | 0.437 | 0.0856 | -0.433 | -- | -- | 0.049 | 21.1 | 44.31 | 31 | -- | -- |
| 13.74 | 0.173 | 10.4 | 0.648 | -- | -0.355 | -- | -1.26 | 0.0975 | -- | 30.69 | 38 | -- | -- |
| 16.41 | 0.19 | 10.4 | 0.493 | 0.018 | -- | -0.63 | -- | 0.105 | 22.2 | -- | -- | -- | -- |
| 16.99 | 0.193 | 10.4 | 0.523 | 0.14 | -- | -- | -- | 0.11 | 17.1 | -- | -- | -- | -- |
| 15.53 | 0.184 | 10.4 | 0.443 | -- | -0.387 | -- | -- | 0.0529 | -- | 32.84 | 146 | -- | -- |
| 19.76 | 0.207 | 10.4 | -- | 0.115 | -0.65 | -- | -- | -0.0253 | 23.5 | 55.08 | 31 | -- | -- |
| 18.02 | 0.198 | 10.4 | 0.518 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 24.2 | 0.23 | 10.4 | -- | 0.131 | -- | -- | -- | 0.0517 | 17.2 | -- | -- | -- | -- |
| 20.15 | 0.209 | 10.4 | -- | -- | -0.511 | -- | -- | -0.0207 | -- | 31.46 | 203 | -- | -- |
| 25.09 | 0.234 | 10.4 | -- | -- | -- | -- | -- | 0.0489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.50 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 2 | 12.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 6 | 12.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 7 | 12.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 12 | 12.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 13 | 12.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 16 | 12.57 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 17 | 12.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 19 | 12.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 12.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 25 | 12.61 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 26 | 12.61 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 33 | 12.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 47 | 12.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 49 | 12.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 51 | 12.67 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 52 | 12.67 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 66 | 12.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 67 | 12.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 93 | 12.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 128 | 12.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 129 | 12.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 164 | 12.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 178 | 12.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 198 | 12.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 199 | 12.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 233 | 12.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 299 | 12.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 336 | 13.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 351 | 13.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 369 | 13.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 383 | 13.06 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 385 | 13.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 18 |
| 400 | 13.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 435 | 13.09 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 19 |
| 436 | 13.09 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 23 |
| 457 | 13.10 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 17 |
| 487 | 13.11 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 604 | 13.15 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 19 |
| 660 | 13.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 710 | 13.19 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 14 |
| 736 | 13.20 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 19 |
| 768 | 13.21 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 22 |
| 872 | 13.25 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 898 | 13.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 918 | 13.26 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 13 |
| 953 | 13.27 | temperature | 25 | 10 | > th | dose independent | sin | 21 | NA |