Os07g0164200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Translation factor domain containing protein.
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Os07g0164200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Translation factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.19 | 0.415 | 10.7 | -0.149 | 1.25 | 1.05 | -0.812 | -0.393 | -0.769 | 21.2 | 20.8 | 9 | -- | -- |
| 78.18 | 0.415 | 10.7 | -0.167 | 1.25 | 1.16 | -0.845 | -- | -0.77 | 21.2 | 20.8 | 9 | -- | -- |
| 80.23 | 0.42 | 10.7 | -0.0991 | 1.25 | 0.994 | -- | -0.772 | -0.764 | 21.3 | 20.8 | 3 | -- | -- |
| 80.58 | 0.421 | 10.7 | -0.125 | 1.25 | 1.27 | -- | -- | -0.771 | 21.2 | 20.4 | 2 | -- | -- |
| 167.36 | 0.603 | 10.6 | -0.0229 | -- | 1.36 | -- | -0.357 | -0.689 | -- | 22.52 | 2 | -- | -- |
| 88.45 | 0.441 | 10.7 | -0.361 | 1.3 | -- | -0.937 | -- | -0.861 | 21.4 | -- | -- | -- | -- |
| 91.66 | 0.448 | 10.7 | -0.327 | 1.31 | -- | -- | -- | -0.86 | 21.5 | -- | -- | -- | -- |
| 167.33 | 0.605 | 10.7 | -0.0594 | -- | 1.41 | -- | -- | -0.703 | -- | 22.5 | 2 | -- | -- |
| 80.96 | 0.421 | 10.7 | -- | 1.25 | 1.34 | -- | -- | -0.754 | 21.2 | 20.4 | 2 | -- | -- |
| 192.08 | 0.648 | 10.7 | -0.318 | -- | -- | -- | -- | -0.864 | -- | -- | -- | -- | -- |
| 94.47 | 0.455 | 10.7 | -- | 1.31 | -- | -- | -- | -0.823 | 21.4 | -- | -- | -- | -- |
| 167.42 | 0.605 | 10.6 | -- | -- | 1.43 | -- | -- | -0.694 | -- | 22.5 | 2 | -- | -- |
| 194.75 | 0.651 | 10.7 | -- | -- | -- | -- | -- | -0.828 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.39 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 2 | 75.68 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 3 | 75.68 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 75.88 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 5 | 76.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 6 | 76.11 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 7 | 76.21 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 8 | 76.22 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 10 | 76.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 11 | 76.50 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 12 | 76.50 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 13 | 76.54 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 15 | 76.60 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 16 | 76.60 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 17 | 76.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 20 | 76.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 21 | 76.66 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 22 | 76.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 34 | 76.92 | temperature | 20.0 | 10 | > th | dose independent | rect. | 10 | 22 |
| 37 | 77.13 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 4 |
| 39 | 77.20 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 43 | 77.24 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 44 | 77.24 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 51 | 77.31 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 58 | 77.35 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 63 | 77.36 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 65 | 77.36 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 66 | 77.37 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 82 | 77.42 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 84 | 77.42 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 86 | 77.44 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 3 | NA |
| 88 | 77.44 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 3 | NA |
| 89 | 77.45 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 3 | NA |
| 97 | 77.48 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 109 | 77.52 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 110 | 77.52 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 111 | 77.52 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 14 |
| 112 | 77.53 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 114 | 77.54 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 121 | 77.56 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 123 | 77.56 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 128 | 77.58 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 132 | 77.58 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 150 | 77.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 153 | 77.64 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 24 | 16 |
| 155 | 77.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 156 | 77.64 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 170 | 77.67 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 4 | NA |
| 233 | 77.80 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 237 | 77.80 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 258 | 77.83 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 312 | 77.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 316 | 77.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 349 | 77.99 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 375 | 78.07 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 13 |
| 401 | 78.15 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 408 | 78.17 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 412 | 78.17 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 434 | 78.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 440 | 78.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 5 |
| 450 | 78.25 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 472 | 78.30 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 485 | 78.33 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 486 | 78.33 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 6 |
| 493 | 78.36 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 518 | 78.40 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 556 | 78.50 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 562 | 78.50 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 576 | 78.52 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 608 | 78.57 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 613 | 78.59 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 616 | 78.59 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 662 | 78.66 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 14 |
| 677 | 78.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 679 | 78.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 684 | 78.68 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 22 |
| 700 | 78.70 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 703 | 78.70 | temperature | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 714 | 78.70 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 716 | 78.70 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 719 | 78.71 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 727 | 78.71 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 728 | 78.72 | radiation | 30.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 731 | 78.72 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 18 |
| 738 | 78.72 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 742 | 78.73 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 754 | 78.76 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 755 | 78.76 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 756 | 78.76 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 759 | 78.76 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 766 | 78.77 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 776 | 78.77 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 780 | 78.78 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 788 | 78.79 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 796 | 78.81 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 813 | 78.84 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 817 | 78.84 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 838 | 78.88 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 865 | 78.91 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 866 | 78.91 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 882 | 78.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 890 | 78.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 897 | 78.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 900 | 78.94 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 901 | 78.94 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 10 | 9 |
| 902 | 78.94 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 12 | 11 |
| 912 | 78.95 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 913 | 78.96 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 930 | 78.98 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 931 | 78.98 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 959 | 79.00 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 961 | 79.00 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 999 | 79.04 | radiation | 20.0 | 270 | < th | dose independent | rect. | 7 | 3 |