Os07g0163900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0163900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.15 | 0.556 | 4.64 | 2.19 | 3.25 | 1.01 | 2.31 | -1.34 | 0.603 | 19.9 | 69.21 | 1369 | -- | -- |
| 142.28 | 0.556 | 4.65 | 2.04 | 3.26 | 0.919 | 2.32 | -- | 0.568 | 19.9 | 69.03 | 1348 | -- | -- |
| 148.92 | 0.568 | 4.64 | 2.24 | 3.57 | 1.23 | -- | -2.15 | 0.696 | 19.9 | 71.27 | 2276 | -- | -- |
| 157.74 | 0.585 | 4.64 | 1.98 | 3.26 | 0.923 | -- | -- | 0.574 | 19.8 | 69.65 | 1427 | -- | -- |
| 739.91 | 1.27 | 4.55 | 2.07 | -- | 0.96 | -- | -1.34 | 0.667 | -- | 70.75 | 2887 | -- | -- |
| 155.87 | 0.585 | 4.67 | 2.05 | 3.28 | -- | 2.27 | -- | 0.465 | 19.8 | -- | -- | -- | -- |
| 170.69 | 0.612 | 4.67 | 1.99 | 3.28 | -- | -- | -- | 0.469 | 19.8 | -- | -- | -- | -- |
| 731.62 | 1.26 | 4.56 | 1.93 | -- | 1.18 | -- | -- | 0.554 | -- | 70.64 | 1405 | -- | -- |
| 247.78 | 0.733 | 4.63 | -- | 3.51 | 1.31 | -- | -- | 0.561 | 19.9 | 82.48 | 2328 | -- | -- |
| 752.1 | 1.28 | 4.59 | 1.95 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 275.24 | 0.776 | 4.72 | -- | 3.26 | -- | -- | -- | 0.247 | 19.8 | -- | -- | -- | -- |
| 824.44 | 1.34 | 4.59 | -- | -- | 1.4 | -- | -- | 0.393 | -- | 79.88 | 1407 | -- | -- |
| 852.54 | 1.36 | 4.64 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 7 | 136.37 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 9 | 136.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 18 | 136.72 | temperature | 15 | 270 | > th | dose independent | rect. | 14 | 23 |
| 42 | 137.25 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 21 |
| 45 | 137.35 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 18 |
| 49 | 137.45 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 52 | 137.49 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 54 | 137.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 55 | 137.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 60 | 137.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 62 | 137.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 67 | 137.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 95 | 137.98 | temperature | 15 | 90 | > th | dose independent | rect. | 17 | 20 |
| 98 | 138.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 101 | 138.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 120 | 138.11 | wind | 5 | 270 | < th | dose independent | rect. | 11 | 4 |
| 131 | 138.15 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 136 | 138.19 | wind | 5 | 270 | < th | dose independent | rect. | 12 | 2 |
| 168 | 138.34 | humidity | 70 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 181 | 138.42 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 193 | 138.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 201 | 138.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 209 | 138.53 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 245 | 138.67 | temperature | 15 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 254 | 138.70 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 283 | 138.82 | wind | 7 | 270 | < th | dose dependent | rect. | 11 | 4 |
| 314 | 138.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 375 | 139.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 382 | 139.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 386 | 139.12 | temperature | 15 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 391 | 139.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 436 | 139.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 445 | 139.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 446 | 139.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 465 | 139.34 | wind | 9 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 472 | 139.37 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 486 | 139.38 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 490 | 139.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 539 | 139.49 | wind | 9 | 90 | < th | dose dependent | rect. | 13 | 4 |
| 553 | 139.53 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 17 | 9 |
| 566 | 139.54 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 587 | 139.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 594 | 139.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 601 | 139.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 619 | 139.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 634 | 139.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 636 | 139.66 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 640 | 139.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 643 | 139.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 684 | 139.70 | temperature | 15 | 30 | > th | dose independent | rect. | 19 | 18 |
| 688 | 139.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 698 | 139.73 | temperature | 15 | 30 | > th | dose independent | rect. | 21 | 16 |
| 715 | 139.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 17 |
| 747 | 139.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 829 | 139.87 | temperature | 10 | 30 | > th | dose dependent | rect. | 4 | 9 |
| 832 | 139.88 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 10 |