Os07g0163800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0163800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.95 | 0.266 | 10.9 | 0.951 | 0.0918 | -0.951 | 0.143 | 1.15 | 0.405 | 16.4 | 21.84 | 257 | -- | -- |
| 32.71 | 0.266 | 10.9 | 0.762 | 0.0708 | -0.846 | 0.287 | -- | 0.347 | 15 | 21.87 | 230 | -- | -- |
| 31.99 | 0.263 | 10.9 | 0.977 | 0.0927 | -0.957 | -- | 1.29 | 0.413 | 16.5 | 21.82 | 256 | -- | -- |
| 33.1 | 0.268 | 10.9 | 0.736 | 0.0693 | -0.846 | -- | -- | 0.34 | 15.6 | 21.83 | 235 | -- | -- |
| 32.27 | 0.265 | 10.9 | 0.945 | -- | -0.874 | -- | 1.17 | 0.398 | -- | 21.43 | 265 | -- | -- |
| 45.63 | 0.317 | 10.9 | 0.552 | 0.282 | -- | -0.139 | -- | 0.202 | 4.77 | -- | -- | -- | -- |
| 45.68 | 0.316 | 10.9 | 0.553 | 0.281 | -- | -- | -- | 0.203 | 4.81 | -- | -- | -- | -- |
| 33.26 | 0.269 | 10.9 | 0.731 | -- | -0.788 | -- | -- | 0.329 | -- | 21.83 | 266 | -- | -- |
| 46.35 | 0.317 | 10.9 | -- | 0.0279 | -0.624 | -- | -- | 0.223 | 2.99 | 22.48 | 272 | -- | -- |
| 49.86 | 0.33 | 10.9 | 0.563 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 53.73 | 0.343 | 10.9 | -- | 0.291 | -- | -- | -- | 0.141 | 4.76 | -- | -- | -- | -- |
| 46.35 | 0.317 | 10.9 | -- | -- | -0.644 | -- | -- | 0.22 | -- | 23.06 | 248 | -- | -- |
| 58.22 | 0.356 | 10.9 | -- | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 31.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 31.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 11 | 32.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 14 | 32.15 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 17 | 32.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 45 | 32.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 52 | 32.82 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 59 | 32.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 114 | 33.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 149 | 33.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 157 | 33.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 187 | 33.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 212 | 33.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 279 | 33.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 316 | 33.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 322 | 33.71 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 355 | 33.76 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 407 | 33.84 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 435 | 33.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 437 | 33.89 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 444 | 33.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 462 | 33.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 19 |
| 490 | 33.96 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 511 | 33.98 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 518 | 33.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 561 | 34.05 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 619 | 34.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 630 | 34.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 677 | 34.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 691 | 34.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 751 | 34.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 837 | 34.30 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 871 | 34.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 926 | 34.33 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |