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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0161900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : VQ domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0403) R2 : 0.0205
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.262 (0.0848) R2dN8 : 0.0265 R2N8 : 0.0205
σ : 0.759
deviance : 264.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
245.71 0.736 2.6 3.03 0.256 -23.4 0.666 145 -0.217 22.7 995.7 1289 -- --
257.02 0.752 3.08 0.25 0.246 -0.453 0.659 -- -0.24 23.3 995.7 1289 -- --
246.98 0.732 2.63 2.81 0.245 -23.6 -- 147 -0.218 22.4 995.9 1089 -- --
248.81 0.735 3.08 0.16 0.224 1.3 -- -- -0.218 21.5 997.3 1124 -- --
250.69 0.737 2.65 2.71 -- -23.7 -- 148 -0.215 -- 996 1046 -- --
257.44 0.752 3.08 0.244 0.247 -- 0.665 -- -0.237 23.4 -- -- -- --
259.33 0.754 3.08 0.218 0.245 -- -- -- -0.239 23.1 -- -- -- --
251.91 0.739 3.07 0.166 -- 1.43 -- -- -0.214 -- 997.3 1086 -- --
249.15 0.735 3.08 -- 0.24 1.46 -- -- -0.234 22.3 997.4 1127 -- --
263.08 0.758 3.08 0.223 -- -- -- -- -0.237 -- -- -- -- --
260.57 0.755 3.09 -- 0.247 -- -- -- -0.264 23.2 -- -- -- --
252.62 0.74 3.08 -- -- 1.46 -- -- -0.232 -- 997.3 1090 -- --
264.39 0.759 3.08 -- -- -- -- -- -0.262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 237.98 atmosphere 1005 90 < th dose dependent rect. 2 7
11 239.34 atmosphere 1005 270 < th dose dependent rect. 23 9
19 240.28 atmosphere 1000 270 < th dose dependent rect. 20 12
33 241.02 humidity 90 10 < th dose independent rect. 3 1
38 241.35 atmosphere 1000 720 < th dose dependent rect. 20 7
53 241.65 atmosphere 1005 270 < th dose dependent rect. 3 1
72 241.93 humidity 90 90 > th dose dependent rect. 4 23
83 242.02 atmosphere 1005 10 < th dose dependent rect. 24 9
84 242.03 atmosphere 1000 270 < th dose dependent sin 9 NA
106 242.23 humidity 90 10 < th dose dependent rect. 3 1
107 242.25 atmosphere 1005 90 < th dose dependent sin 7 NA
123 242.40 atmosphere 1000 720 < th dose dependent rect. 21 2
125 242.42 humidity 80 90 < th dose independent rect. 2 2
134 242.48 atmosphere 1000 10 < th dose independent rect. 2 7
238 243.24 atmosphere 1000 720 < th dose independent rect. 20 1
322 243.73 atmosphere 1000 270 < th dose independent rect. 3 2
341 243.82 humidity 90 90 > th dose independent rect. 4 23
368 243.98 atmosphere 995 1440 > th dose independent rect. 18 15
370 243.98 atmosphere 995 1440 > th dose independent rect. 3 20
395 244.10 humidity 90 720 < th dose independent rect. 16 12
396 244.10 humidity 90 10 > th dose dependent rect. 5 22
409 244.17 temperature 25 90 < th dose independent rect. 20 20
430 244.24 atmosphere 995 1440 > th dose independent rect. 18 1
432 244.24 atmosphere 995 1440 > th dose independent rect. 18 5
434 244.24 temperature 25 270 > th dose dependent rect. 20 12
481 244.41 temperature 25 270 > th dose independent rect. 1 5
488 244.44 wind 1 10 < th dose independent rect. 22 1
490 244.44 temperature 25 270 < th dose independent rect. 18 19
491 244.44 wind 1 10 < th dose dependent rect. 22 1
499 244.48 temperature 25 4320 > th dose dependent rect. 2 3
506 244.50 temperature 25 90 < th dose independent rect. 4 22
507 244.50 temperature 25 4320 > th dose dependent rect. 2 1
575 244.71 atmosphere 995 1440 > th dose independent rect. 7 16
579 244.72 wind 3 90 > th dose dependent rect. 2 1
617 244.86 temperature 25 90 < th dose independent rect. 20 15
621 244.88 atmosphere 995 1440 > th dose independent rect. 7 14
633 244.91 atmosphere 1000 720 < th dose independent rect. 19 4
638 244.92 humidity 90 90 < th dose dependent rect. 2 5
690 245.09 atmosphere 995 1440 > th dose independent rect. 13 20
705 245.13 humidity 80 720 > th dose dependent rect. 20 6
707 245.13 atmosphere 1015 90 < th dose dependent rect. 2 11
708 245.14 atmosphere 1000 720 < th dose independent rect. 19 8
727 245.22 atmosphere 1000 720 < th dose independent rect. 19 6
740 245.26 atmosphere 995 1440 < th dose independent rect. 18 1
754 245.26 atmosphere 995 1440 > th dose independent rect. 13 10
766 245.26 atmosphere 995 1440 < th dose dependent rect. 18 1
834 245.41 atmosphere 1015 10 < th dose dependent rect. 2 12
848 245.45 atmosphere 995 1440 > th dose independent rect. 22 23
858 245.47 humidity 90 720 < th dose independent rect. 10 18
901 245.57 atmosphere 1000 10 < th dose independent sin 6 NA
912 245.59 atmosphere 995 1440 > th dose independent rect. 17 12
916 245.61 atmosphere 995 1440 < th dose independent sin 9 NA
922 245.62 temperature 25 270 > th dose independent rect. 3 2
971 245.67 atmosphere 995 1440 > th dose independent sin 14 NA
1000 245.68 atmosphere 995 1440 < th dose dependent sin 8 NA