FiT-DB / Search/ Help/ Sample detail
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Os07g0161600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin-domain protein kinase CDPK isoform 2 (Calmodulin-domain protein kinase CDPK isoform 2; 13089-15758) (Calcium-dependent protein kinase isoform 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.22 | 0.29 | 11.2 | 0.0644 | 0.533 | 0.751 | 0.00706 | 0.312 | 0.0741 | 1.44 | 20.53 | 555 | -- | -- |
| 38.51 | 0.289 | 11.2 | 0.0108 | 0.531 | 0.72 | 0.0437 | -- | 0.0625 | 1.37 | 20.5 | 556 | -- | -- |
| 38.22 | 0.288 | 11.2 | 0.0643 | 0.533 | 0.751 | -- | 0.313 | 0.0741 | 1.44 | 20.53 | 555 | -- | -- |
| 38.52 | 0.289 | 11.2 | 0.00463 | 0.532 | 0.721 | -- | -- | 0.0608 | 1.4 | 20.5 | 554 | -- | -- |
| 51.58 | 0.334 | 11.2 | 0.0337 | -- | 0.883 | -- | 0.408 | 0.0372 | -- | 20.8 | 923 | -- | -- |
| 54.33 | 0.346 | 11.1 | 0.256 | 0.559 | -- | 0.0379 | -- | 0.219 | 0.735 | -- | -- | -- | -- |
| 54.34 | 0.345 | 11.1 | 0.255 | 0.559 | -- | -- | -- | 0.219 | 0.744 | -- | -- | -- | -- |
| 52.01 | 0.336 | 11.2 | -0.0571 | -- | 0.849 | -- | -- | 0.0255 | -- | 20.8 | 886 | -- | -- |
| 38.52 | 0.289 | 11.2 | -- | 0.533 | 0.721 | -- | -- | 0.0609 | 1.4 | 20.51 | 555 | -- | -- |
| 73.87 | 0.402 | 11.1 | 0.275 | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
| 56.04 | 0.35 | 11.1 | -- | 0.563 | -- | -- | -- | 0.19 | 0.764 | -- | -- | -- | -- |
| 52.08 | 0.336 | 11.2 | -- | -- | 0.829 | -- | -- | 0.0318 | -- | 20.8 | 911 | -- | -- |
| 75.86 | 0.407 | 11.1 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 13 |
| 2 | 38.35 | temperature | 20.0 | 720 | > th | dose independent | sin | 13 | NA |
| 24 | 38.79 | temperature | 20.0 | 720 | < th | dose independent | sin | 13 | NA |
| 26 | 38.79 | temperature | 20.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 30 | 38.82 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 37 | 38.90 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 18 |
| 41 | 38.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 21 |
| 75 | 39.14 | temperature | 20.0 | 720 | < th | dose independent | rect. | 11 | 18 |
| 83 | 39.16 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 21 |
| 98 | 39.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 19 |
| 106 | 39.27 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 21 |
| 114 | 39.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 23 |
| 117 | 39.31 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 23 |
| 120 | 39.32 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 122 | 39.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 153 | 39.40 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 161 | 39.42 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 182 | 39.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 23 |
| 213 | 39.55 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 219 | 39.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 23 |
| 301 | 39.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 311 | 39.84 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 315 | 39.84 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 334 | 39.93 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 340 | 39.95 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 382 | 40.11 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 402 | 40.22 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 494 | 40.62 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 530 | 40.73 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 558 | 40.82 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 622 | 40.96 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 644 | 41.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 653 | 41.03 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 669 | 41.06 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 680 | 41.08 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 704 | 41.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 721 | 41.17 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 731 | 41.19 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 802 | 41.31 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 853 | 41.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 871 | 41.41 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 960 | 41.56 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 966 | 41.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 970 | 41.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
