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Os07g0159200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0143) R2 : 0.593
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.893 (0.0348) R2dC : 0.589 R2C : 0.59
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0435 (0.03) R2dN8 : 0.00242 R2N8 : 0.00329
σ : 0.269
deviance : 33.05
__
_____
C
peak time of C : 14.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.98 0.244 10.9 0.143 0.848 -0.716 -0.225 0.515 -0.119 14.2 50 4122 -- --
27.15 0.243 10.9 0.115 0.85 -0.571 -0.245 -- -0.108 14.2 51 4117 -- --
27.16 0.243 10.9 0.139 0.845 -0.728 -- 0.558 -0.119 14.2 50 4067 -- --
27.32 0.243 10.9 0.0907 0.853 -0.561 -- -- -0.119 14.2 50.65 4049 -- --
69.19 0.387 10.9 0.111 -- -1.01 -- 0.767 -0.144 -- 50.94 4024 -- --
32.61 0.268 10.9 -0.116 0.891 -- -0.131 -- -0.0561 14.1 -- -- -- --
32.67 0.268 10.9 -0.12 0.891 -- -- -- -0.0568 14.1 -- -- -- --
69.38 0.388 10.9 0.0681 -- -0.681 -- -- -0.188 -- 52 4001 -- --
27.45 0.244 10.9 -- 0.846 -0.504 -- -- -0.133 14.2 51 4035 -- --
80.16 0.418 10.9 -0.157 -- -- -- -- -0.078 -- -- -- -- --
33.05 0.269 10.9 -- 0.893 -- -- -- -0.0435 14.1 -- -- -- --
69.45 0.388 10.9 -- -- -0.672 -- -- -0.195 -- 53 3997 -- --
80.81 0.42 10.9 -- -- -- -- -- -0.0606 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.90 temperature 15.0 270 > th dose independent rect. 2 17
2 21.94 atmosphere 995.0 270 > th dose independent rect. 2 17
3 22.07 precipitation 0.1 270 < th dose independent rect. 2 17
4 22.07 precipitation 0.1 270 < th dose dependent rect. 2 17
5 22.08 atmosphere 995.0 270 > th dose independent rect. 14 16
6 22.24 precipitation 0.1 270 < th dose independent rect. 14 16
7 22.24 precipitation 0.1 270 < th dose dependent rect. 14 16
8 22.27 wind 9.0 270 < th dose independent rect. 6 8
9 22.35 radiation 40.0 270 < th dose independent rect. 14 16
10 22.37 humidity 50.0 270 > th dose independent rect. 6 8
13 22.39 wind 9.0 270 < th dose independent rect. 19 7
14 22.40 humidity 60.0 270 > th dose independent rect. 19 7
16 22.41 temperature 10.0 270 > th dose independent rect. 19 7
17 22.41 temperature 30.0 270 < th dose independent rect. 19 7
19 22.41 atmosphere 995.0 270 > th dose independent rect. 19 7
20 22.41 radiation 1.0 270 < th dose independent rect. 19 7
26 22.41 atmosphere 1015.0 270 < th dose independent rect. 2 17
27 22.41 radiation 1.0 270 < th dose dependent rect. 19 7
33 22.42 temperature 10.0 270 > th dose independent rect. 6 8
34 22.42 atmosphere 995.0 270 > th dose independent rect. 6 8
35 22.42 atmosphere 1015.0 270 < th dose independent rect. 6 8
36 22.42 temperature 10.0 270 > th dose independent rect. 14 16
39 22.46 precipitation 0.1 270 < th dose independent rect. 6 8
41 22.46 precipitation 0.1 270 < th dose dependent rect. 6 8
43 22.49 temperature 10.0 270 > th dose dependent rect. 19 7
45 22.54 wind 9.0 270 < th dose independent rect. 8 17
46 22.56 wind 1.0 270 > th dose independent rect. 13 7
47 22.58 precipitation 0.1 270 < th dose independent rect. 19 7
48 22.58 precipitation 0.1 270 < th dose dependent rect. 19 7
53 22.67 atmosphere 995.0 270 > th dose independent rect. 13 7
61 22.71 precipitation 0.1 270 < th dose independent rect. 1 7
64 22.71 precipitation 0.1 270 < th dose dependent rect. 1 7
70 22.76 wind 9.0 270 < th dose independent rect. 14 16
75 22.84 humidity 50.0 270 > th dose independent rect. 20 17
77 22.84 wind 9.0 270 < th dose dependent rect. 19 6
80 22.87 precipitation 0.1 270 < th dose independent rect. 13 7
83 22.87 radiation 40.0 270 < th dose dependent rect. 1 7
84 22.87 precipitation 0.1 270 < th dose dependent rect. 13 7
88 22.90 wind 9.0 270 < th dose independent rect. 1 7
89 22.90 temperature 10.0 270 > th dose independent rect. 1 7
91 22.90 temperature 30.0 270 < th dose independent rect. 1 7
92 22.90 humidity 50.0 270 > th dose independent rect. 1 7
94 22.90 atmosphere 995.0 270 > th dose independent rect. 1 7
95 22.90 atmosphere 1015.0 270 < th dose independent rect. 1 7
96 22.90 radiation 30.0 270 < th dose independent rect. 1 7
99 22.90 temperature 10.0 270 > th dose independent rect. 8 17
101 22.90 wind 9.0 270 < th dose dependent rect. 8 17
115 22.97 wind 9.0 270 < th dose independent rect. 20 17
116 22.97 humidity 50.0 270 > th dose dependent rect. 1 7
134 22.99 wind 9.0 270 < th dose independent rect. 2 17
135 22.99 humidity 50.0 270 > th dose independent rect. 8 17
143 23.03 radiation 1.0 270 > th dose independent rect. 6 8
163 23.10 temperature 10.0 270 > th dose independent rect. 13 7
164 23.10 atmosphere 1015.0 270 < th dose independent rect. 13 7
166 23.10 temperature 10.0 270 > th dose independent rect. 20 17
167 23.10 atmosphere 995.0 270 > th dose independent rect. 20 17
177 23.19 radiation 40.0 90 < th dose dependent rect. 15 18
178 23.21 precipitation 0.1 270 < th dose independent rect. 20 17
179 23.21 precipitation 0.1 270 < th dose dependent rect. 20 17
190 23.26 humidity 50.0 270 > th dose dependent rect. 19 6
211 23.34 precipitation 0.1 270 < th dose independent rect. 8 17
212 23.34 precipitation 0.1 270 < th dose dependent rect. 8 17
260 23.41 wind 9.0 270 < th dose independent rect. 13 7
383 23.67 atmosphere 995.0 270 > th dose dependent rect. 13 7
400 23.71 radiation 20.0 90 < th dose independent rect. 15 17
442 23.75 radiation 10.0 270 < th dose dependent rect. 1 18
491 23.82 radiation 40.0 270 < th dose independent rect. 14 5
492 23.82 wind 1.0 270 > th dose independent rect. 19 7
510 23.84 atmosphere 1015.0 270 < th dose independent rect. 19 7
542 23.89 wind 9.0 270 < th dose dependent rect. 1 7
572 23.96 wind 1.0 270 > th dose independent rect. 14 16
583 23.98 radiation 30.0 90 < th dose dependent rect. 3 17
592 24.00 wind 1.0 270 > th dose independent rect. 6 8
654 24.10 radiation 1.0 10 > th dose independent rect. 9 7
694 24.15 wind 1.0 270 > th dose independent rect. 2 17
814 24.25 radiation 30.0 10 < th dose dependent rect. 4 16
822 24.26 wind 1.0 270 > th dose dependent rect. 13 7
841 24.27 atmosphere 1015.0 270 < th dose independent rect. 8 17
844 24.27 wind 9.0 90 < th dose dependent rect. 3 6
873 24.31 atmosphere 1015.0 270 < th dose independent rect. 14 16
877 24.31 wind 9.0 270 < th dose dependent rect. 7 7
905 24.35 atmosphere 1015.0 270 < th dose independent rect. 20 17
935 24.38 radiation 20.0 90 < th dose independent rect. 3 17
965 24.42 radiation 1.0 270 < th dose independent rect. 2 17