Os07g0158800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF266, plant family protein.
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Os07g0158800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF266, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.32 | 0.385 | 9.79 | 1.1 | 0.449 | 0.284 | -0.715 | -1.35 | 0.438 | 19.1 | 10.17 | 1467 | -- | -- |
| 69.84 | 0.389 | 9.74 | 1.32 | 0.413 | 0.295 | -0.723 | -- | 0.541 | 19.1 | 10.75 | 1668 | -- | -- |
| 68.54 | 0.386 | 9.79 | 1.12 | 0.45 | 0.275 | -- | -1.34 | 0.443 | 18.8 | 10.22 | 1388 | -- | -- |
| 70.95 | 0.392 | 9.74 | 1.32 | 0.402 | 0.302 | -- | -- | 0.531 | 19.4 | 10.83 | 1750 | -- | -- |
| 69.48 | 0.388 | 9.76 | 1.33 | -- | 0.49 | -- | -1.31 | 0.579 | -- | 0.91 | 918 | -- | -- |
| 71.79 | 0.397 | 9.73 | 1.39 | 0.449 | -- | -0.699 | -- | 0.597 | 18.9 | -- | -- | -- | -- |
| 73.05 | 0.4 | 9.73 | 1.4 | 0.448 | -- | -- | -- | 0.596 | 18.9 | -- | -- | -- | -- |
| 70.76 | 0.392 | 9.73 | 1.33 | -- | 0.617 | -- | -- | 0.604 | -- | 0.4799 | 839 | -- | -- |
| 114.33 | 0.498 | 9.83 | -- | 0.456 | 0.555 | -- | -- | 0.313 | 19.1 | 10 | 1475 | -- | -- |
| 83.55 | 0.427 | 9.72 | 1.4 | -- | -- | -- | -- | 0.587 | -- | -- | -- | -- | -- |
| 125.07 | 0.523 | 9.77 | -- | 0.432 | -- | -- | -- | 0.439 | 19.1 | -- | -- | -- | -- |
| 113.5 | 0.496 | 9.77 | -- | -- | 1.15 | -- | -- | 0.368 | -- | 5.805e-05 | 1249 | -- | -- |
| 134.9 | 0.542 | 9.76 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 63.77 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 64.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 4 | 64.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 11 | 64.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 13 | 64.65 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 21 | 64.90 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 6 |
| 27 | 65.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 42 | 65.31 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 58 | 65.43 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 59 | 65.43 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 67 | 65.50 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 70 | 65.51 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 18 | 6 |
| 84 | 65.56 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 107 | 65.67 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 124 | 65.79 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 146 | 65.91 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 17 | 13 |
| 169 | 66.07 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 15 | 16 |
| 174 | 66.09 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 13 | NA |
| 187 | 66.14 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 188 | 66.14 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 233 | 66.26 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 238 | 66.27 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 267 | 66.35 | atmosphere | 1005.0 | 270 | < th | dose independent | sin | 13 | NA |
| 273 | 66.36 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 281 | 66.38 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 293 | 66.40 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 309 | 66.43 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 339 | 66.45 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 356 | 66.50 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 361 | 66.51 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 380 | 66.57 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 17 | 15 |
| 404 | 66.60 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 416 | 66.61 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 461 | 66.68 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 466 | 66.70 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 497 | 66.75 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 498 | 66.76 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 520 | 66.77 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 556 | 66.80 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 598 | 66.82 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 611 | 66.82 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 702 | 66.92 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 711 | 66.94 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 721 | 66.96 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 865 | 67.08 | atmosphere | 1005.0 | 10 | > th | dose independent | sin | 11 | NA |
| 867 | 67.08 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 934 | 67.14 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 13 |
| 949 | 67.15 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 8 |
| 959 | 67.17 | humidity | 90.0 | 720 | < th | dose independent | rect. | 21 | 3 |
| 981 | 67.19 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 987 | 67.20 | atmosphere | 1005.0 | 10 | < th | dose independent | sin | 11 | NA |