Os07g0158200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TatD-related deoxyribonuclease family protein.
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Os07g0158200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TatD-related deoxyribonuclease family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.31 | 0.454 | 8.17 | 0.0737 | 2.04 | 0.935 | 0.907 | -2.42 | -0.231 | 20.7 | 24.2 | 114 | -- | -- |
| 99.22 | 0.464 | 8.22 | -0.102 | 2.15 | 1.66 | 0.852 | -- | -0.279 | 20.8 | 22.06 | 344 | -- | -- |
| 94.69 | 0.453 | 8.18 | 0.073 | 2.08 | 0.963 | -- | -2.35 | -0.229 | 20.7 | 24.03 | 243 | -- | -- |
| 99.96 | 0.466 | 8.22 | -0.175 | 2.14 | 1.65 | -- | -- | -0.308 | 20.8 | 21.83 | 345 | -- | -- |
| 317.36 | 0.834 | 8.12 | 0.0246 | -- | 1.6 | -- | -1.49 | -0.186 | -- | 24.1 | 16 | -- | -- |
| 122.54 | 0.519 | 8.26 | -0.539 | 2.08 | -- | 0.546 | -- | -0.49 | 20.9 | -- | -- | -- | -- |
| 123.54 | 0.521 | 8.26 | -0.558 | 2.07 | -- | -- | -- | -0.491 | 20.9 | -- | -- | -- | -- |
| 320.81 | 0.838 | 8.14 | -0.176 | -- | 1.77 | -- | -- | -0.235 | -- | 23.84 | 7 | -- | -- |
| 100.9 | 0.468 | 8.21 | -- | 2.14 | 1.77 | -- | -- | -0.284 | 20.8 | 21.75 | 352 | -- | -- |
| 369.55 | 0.898 | 8.2 | -0.557 | -- | -- | -- | -- | -0.505 | -- | -- | -- | -- | -- |
| 131.75 | 0.537 | 8.24 | -- | 2.07 | -- | -- | -- | -0.429 | 20.9 | -- | -- | -- | -- |
| 321.49 | 0.838 | 8.14 | -- | -- | 1.85 | -- | -- | -0.212 | -- | 23.72 | 7 | -- | -- |
| 377.74 | 0.907 | 8.19 | -- | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.01 | temperature | 25 | 90 | < th | dose dependent | sin | 6 | NA |
| 2 | 85.13 | temperature | 25 | 10 | < th | dose dependent | sin | 5 | NA |
| 10 | 87.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 30 | 89.75 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 14 |
| 37 | 89.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 39 | 90.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 8 |
| 42 | 90.06 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 44 | 90.10 | temperature | 20 | 270 | > th | dose independent | sin | 4 | NA |
| 71 | 91.18 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 148 | 92.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 198 | 93.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 199 | 93.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 205 | 93.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 243 | 93.52 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 272 | 93.72 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 22 |
| 297 | 93.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 323 | 94.01 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 346 | 94.19 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 372 | 94.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 398 | 94.47 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 438 | 94.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 440 | 94.68 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 455 | 94.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 456 | 94.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 467 | 94.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 474 | 94.89 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 638 | 96.27 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 673 | 96.49 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 674 | 96.49 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 23 |
| 677 | 96.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 728 | 96.84 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 11 |
| 733 | 96.88 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 778 | 97.17 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 890 | 97.86 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |