Os07g0158000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0158000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.91 | 0.425 | 7.4 | 0.339 | 0.146 | -0.746 | -0.85 | 0.482 | 0.0355 | 18.8 | 22.1 | 731 | -- | -- |
| 82.57 | 0.423 | 7.42 | 0.194 | 0.135 | -0.758 | -0.635 | -- | -0.00286 | 18.8 | 22.2 | 759 | -- | -- |
| 83.26 | 0.425 | 7.41 | 0.31 | 0.162 | -0.773 | -- | 0.281 | 0.0142 | 20.6 | 22.1 | 770 | -- | -- |
| 83.38 | 0.425 | 7.42 | 0.206 | 0.147 | -0.758 | -- | -- | -0.00315 | 20.6 | 22.15 | 769 | -- | -- |
| 84.45 | 0.428 | 7.41 | 0.281 | -- | -0.728 | -- | 0.212 | -0.00634 | -- | 22.1 | 784 | -- | -- |
| 107.46 | 0.486 | 7.47 | -0.0517 | 0.0476 | -- | -0.715 | -- | -0.248 | 17.4 | -- | -- | -- | -- |
| 108.67 | 0.488 | 7.47 | -0.0491 | 0.0518 | -- | -- | -- | -0.251 | 15.1 | -- | -- | -- | -- |
| 84.58 | 0.428 | 7.42 | 0.196 | -- | -0.745 | -- | -- | -0.00759 | -- | 22.2 | 787 | -- | -- |
| 84.4 | 0.428 | 7.42 | -- | 0.142 | -0.727 | -- | -- | -0.0333 | 20.6 | 22.18 | 769 | -- | -- |
| 108.83 | 0.487 | 7.47 | -0.0513 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 108.74 | 0.488 | 7.47 | -- | 0.0527 | -- | -- | -- | -0.245 | 15.1 | -- | -- | -- | -- |
| 85.48 | 0.431 | 7.42 | -- | -- | -0.685 | -- | -- | -0.0419 | -- | 22.2 | 782 | -- | -- |
| 108.89 | 0.487 | 7.47 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.88 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 3 | 81.27 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 4 | 81.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 9 | 82.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 17 | 82.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 24 | 82.40 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 79 | 83.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 88 | 83.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 148 | 84.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 161 | 84.22 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 178 | 84.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 181 | 84.39 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 203 | 84.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 215 | 84.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 239 | 84.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 252 | 84.87 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 21 |
| 262 | 84.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 269 | 84.91 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 318 | 85.06 | humidity | 60 | 43200 | < th | dose dependent | sin | 3 | NA |
| 355 | 85.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 369 | 85.18 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 384 | 85.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 396 | 85.26 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 416 | 85.30 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 421 | 85.31 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 427 | 85.31 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 449 | 85.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 543 | 85.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 575 | 85.44 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 710 | 85.66 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 728 | 85.69 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 751 | 85.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 843 | 85.83 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 846 | 85.83 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 893 | 85.91 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 922 | 85.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 992 | 86.04 | temperature | 15 | 30 | > th | dose dependent | rect. | 17 | 23 |