Os07g0154800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0154800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.22 | 0.436 | 7.71 | 1.45 | 0.999 | -1.29 | 0.101 | -0.811 | 0.548 | 21 | 29.66 | 91 | -- | -- |
| 87.26 | 0.435 | 7.7 | 1.36 | 0.991 | -1.31 | -0.0194 | -- | 0.534 | 21 | 30.11 | 89 | -- | -- |
| 86.25 | 0.433 | 7.71 | 1.45 | 0.999 | -1.29 | -- | -0.782 | 0.547 | 21 | 29.7 | 91 | -- | -- |
| 87.02 | 0.434 | 7.73 | 1.32 | 0.996 | -1.3 | -- | -- | 0.508 | 21 | 29.9 | 90 | -- | -- |
| 116.52 | 0.503 | 7.7 | 1.23 | -- | -1.86 | -- | -0.302 | 0.482 | -- | 32.83 | 567 | -- | -- |
| 108.78 | 0.489 | 7.67 | 1.63 | 1.08 | -- | 0.15 | -- | 0.767 | 19.4 | -- | -- | -- | -- |
| 108.84 | 0.489 | 7.67 | 1.63 | 1.08 | -- | -- | -- | 0.767 | 19.4 | -- | -- | -- | -- |
| 116.59 | 0.503 | 7.7 | 1.18 | -- | -1.88 | -- | -- | 0.474 | -- | 52.4 | 577 | -- | -- |
| 92.92 | 0.449 | 7.79 | -- | 1.08 | -1.52 | -- | -- | 0.203 | 19.3 | 22.87 | 47520 | -- | -- |
| 171.07 | 0.611 | 7.64 | 1.61 | -- | -- | -- | -- | 0.75 | -- | -- | -- | -- | -- |
| 178.76 | 0.625 | 7.71 | -- | 1.07 | -- | -- | -- | 0.586 | 19.5 | -- | -- | -- | -- |
| 149.7 | 0.57 | 7.74 | -- | -- | -2.3 | -- | -- | 0.291 | -- | 202.4 | 612 | -- | -- |
| 239.59 | 0.722 | 7.68 | -- | -- | -- | -- | -- | 0.571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 22 | 84.95 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 23 | 85.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 24 | 85.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 27 | 85.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 28 | 85.33 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 31 | 85.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 40 | 85.59 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 67 | 86.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 70 | 86.21 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 71 | 86.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 74 | 86.27 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 113 | 86.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 133 | 86.96 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 147 | 87.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 166 | 87.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 213 | 87.63 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 217 | 87.66 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 223 | 87.73 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 235 | 87.79 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 255 | 87.89 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 270 | 87.97 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 275 | 88.01 | temperature | 20.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 306 | 88.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 317 | 88.32 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 326 | 88.39 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 331 | 88.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 333 | 88.43 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 358 | 88.66 | temperature | 20.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 374 | 88.77 | temperature | 10.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 378 | 88.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 402 | 88.94 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 18 |
| 408 | 88.97 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 437 | 89.13 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 16 |
| 447 | 89.18 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 454 | 89.19 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 459 | 89.20 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 462 | 89.20 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 12 |
| 467 | 89.22 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 482 | 89.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 488 | 89.26 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 625 | 89.53 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 636 | 89.54 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 672 | 89.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 673 | 89.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 675 | 89.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 676 | 89.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 686 | 89.60 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 699 | 89.61 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 703 | 89.62 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 716 | 89.64 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 717 | 89.64 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 781 | 89.70 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 782 | 89.70 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 809 | 89.72 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 820 | 89.73 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 833 | 89.74 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 841 | 89.75 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 846 | 89.75 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 853 | 89.75 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 855 | 89.76 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 870 | 89.77 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 872 | 89.77 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 874 | 89.77 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 895 | 89.78 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 948 | 89.81 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 972 | 89.82 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 979 | 89.83 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 1 |