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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0154400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0492) R2 : 0.238
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.17) R2dE : 0.193 R2E : 0.202
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.424 (0.104) R2dN8 : 0.0359 R2N8 : 0.0453
σ : 0.922
deviance : 392.07
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.4
memory length : 493
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
365.63 0.898 3.57 0.981 0.834 0.89 0.769 2.21 0.647 17.6 24.1 628 -- --
367.23 0.893 3.61 0.669 0.768 1.09 1.07 -- 0.563 17.6 24.31 593 -- --
366.71 0.892 3.57 1 0.785 0.942 -- 2.53 0.658 17.7 24.15 588 -- --
369.83 0.896 3.61 0.597 0.73 1.17 -- -- 0.548 17.7 24.41 585 -- --
385.27 0.914 3.58 0.765 -- 1.58 -- 1.78 0.543 -- 24.23 476 -- --
389.46 0.925 3.6 0.845 1.22 -- 1.49 -- 0.664 18.2 -- -- -- --
394.93 0.931 3.6 0.829 1.23 -- -- -- 0.669 18.2 -- -- -- --
386.01 0.915 3.61 0.489 -- 1.74 -- -- 0.481 -- 24.43 478 -- --
378.63 0.906 3.63 -- 0.679 1.31 -- -- 0.467 17.6 24.3 598 -- --
473.36 1.02 3.58 0.795 -- -- -- -- 0.642 -- -- -- -- --
413.06 0.951 3.62 -- 1.22 -- -- -- 0.577 18.2 -- -- -- --
392.07 0.922 3.63 -- -- 1.81 -- -- 0.424 -- 24.4 493 -- --
490.05 1.03 3.6 -- -- -- -- -- 0.554 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 361.67 temperature 10 720 > th dose dependent rect. 12 7
2 361.77 temperature 25 720 > th dose dependent rect. 12 2
3 361.81 temperature 10 720 > th dose dependent rect. 7 10
5 362.12 wind 5 4320 < th dose independent rect. 8 3
7 362.37 wind 5 4320 < th dose independent rect. 6 5
11 362.74 temperature 10 720 > th dose dependent rect. 5 14
15 362.88 wind 5 4320 > th dose independent rect. 3 10
17 362.89 wind 5 4320 > th dose independent rect. 6 5
18 363.03 wind 5 4320 > th dose independent rect. 8 3
23 363.27 wind 5 4320 < th dose independent rect. 3 10
28 363.36 wind 5 4320 > th dose independent rect. 4 7
45 363.69 temperature 30 720 < th dose dependent rect. 9 8
47 363.80 temperature 30 270 < th dose dependent rect. 9 13
50 363.81 temperature 10 720 > th dose dependent sin 0 NA
53 363.85 temperature 25 270 > th dose independent sin 18 NA
56 363.86 temperature 20 720 > th dose dependent rect. 12 5
60 363.88 temperature 30 270 < th dose dependent sin 20 NA
77 364.09 temperature 30 720 < th dose dependent rect. 6 15
80 364.17 wind 5 4320 > th dose dependent rect. 6 4
82 364.20 temperature 25 270 < th dose independent sin 18 NA
89 364.26 temperature 25 270 < th dose independent rect. 9 14
108 364.42 temperature 30 720 < th dose dependent sin 23 NA
139 364.74 wind 5 4320 > th dose dependent rect. 3 10
146 364.84 temperature 25 270 > th dose independent rect. 12 12
166 365.10 wind 5 4320 > th dose dependent rect. 9 1
170 365.13 temperature 30 720 > th dose independent rect. 13 1
195 365.24 temperature 20 270 > th dose dependent rect. 5 19
205 365.34 temperature 25 720 > th dose dependent rect. 12 22
214 365.43 temperature 25 270 < th dose independent rect. 9 16
223 365.45 temperature 25 720 > th dose dependent rect. 21 20
247 365.57 temperature 10 720 > th dose dependent rect. 7 17
267 365.75 temperature 25 270 > th dose independent rect. 12 22
319 366.00 temperature 25 270 > th dose independent rect. 12 19
326 366.02 temperature 30 10 < th dose dependent rect. 11 15
331 366.04 temperature 10 90 > th dose dependent rect. 11 23
346 366.13 temperature 20 270 > th dose dependent rect. 11 13
347 366.14 temperature 20 270 > th dose dependent sin 19 NA
369 366.24 temperature 30 270 < th dose dependent rect. 8 17
410 366.43 temperature 20 270 > th dose dependent rect. 9 15
496 366.68 temperature 25 720 > th dose dependent no NA NA
519 366.71 temperature 10 270 > th dose dependent sin 20 NA
527 366.72 temperature 25 720 < th dose independent rect. 6 15
609 366.90 wind 5 4320 > th dose dependent sin 6 NA
623 366.93 temperature 30 270 < th dose dependent rect. 7 22
639 366.96 radiation 20 720 < th dose independent rect. 15 16
678 367.06 temperature 10 720 > th dose dependent rect. 22 21
691 367.10 temperature 25 720 > th dose independent rect. 5 14
692 367.10 radiation 40 720 < th dose dependent rect. 15 16
721 367.17 temperature 25 720 > th dose dependent rect. 12 15
731 367.19 temperature 25 4320 < th dose independent rect. 22 18
739 367.20 temperature 30 720 < th dose dependent rect. 11 2
746 367.21 wind 5 4320 > th dose independent sin 6 NA
809 367.38 temperature 25 270 > th dose independent rect. 9 22
821 367.40 temperature 25 270 > th dose independent rect. 9 15
825 367.41 temperature 25 4320 < th dose independent rect. 9 18
830 367.43 wind 5 4320 < th dose independent sin 6 NA
834 367.43 temperature 25 10 > th dose dependent sin 10 NA
845 367.47 temperature 25 270 < th dose independent rect. 13 10
861 367.52 radiation 40 720 < th dose dependent rect. 14 8
872 367.55 temperature 20 10 > th dose dependent rect. 12 23
876 367.58 temperature 25 720 < th dose independent sin 23 NA
891 367.62 temperature 25 4320 > th dose independent rect. 21 20
899 367.63 temperature 25 4320 > th dose independent rect. 22 18
922 367.69 temperature 20 10 > th dose dependent sin 15 NA
923 367.69 temperature 30 10 < th dose dependent sin 17 NA
997 367.86 temperature 25 4320 > th dose independent rect. 9 16