Os07g0152200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0152200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.42 | 0.631 | 4.65 | -0.0289 | 1.78 | 1.9 | 2.54 | -3.5 | -0.259 | 2.97 | 27.73 | 1257 | -- | -- |
| 182.07 | 0.628 | 4.57 | 0.673 | 1.79 | 1.54 | 2.42 | -- | -0.17 | 2.93 | 27.5 | 1264 | -- | -- |
| 201.62 | 0.661 | 4.65 | -0.00354 | 1.79 | 1.91 | -- | -3.1 | -0.252 | 3.07 | 27.8 | 1244 | -- | -- |
| 202.01 | 0.662 | 4.57 | 0.655 | 1.77 | 1.6 | -- | -- | -0.188 | 3.07 | 27.4 | 1244 | -- | -- |
| 370.94 | 0.897 | 4.7 | -0.00408 | -- | 2.43 | -- | -2.21 | -0.551 | -- | 25.3 | 1173 | -- | -- |
| 283.9 | 0.79 | 4.58 | 1.2 | 2 | -- | 2.85 | -- | -0.208 | 2.77 | -- | -- | -- | -- |
| 312 | 0.827 | 4.59 | 1.13 | 2.02 | -- | -- | -- | -0.226 | 2.84 | -- | -- | -- | -- |
| 369.9 | 0.896 | 4.62 | 0.539 | -- | 2.19 | -- | -- | -0.387 | -- | 25.3 | 1178 | -- | -- |
| 212.32 | 0.679 | 4.6 | -- | 1.76 | 1.74 | -- | -- | -0.31 | 3.09 | 26.85 | 1245 | -- | -- |
| 546.87 | 1.09 | 4.58 | 1.21 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 345.48 | 0.869 | 4.61 | -- | 2.04 | -- | -- | -- | -0.351 | 2.85 | -- | -- | -- | -- |
| 376.99 | 0.904 | 4.64 | -- | -- | 2.32 | -- | -- | -0.475 | -- | 25.13 | 1178 | -- | -- |
| 585.69 | 1.13 | 4.61 | -- | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.14 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 30 | 175.28 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 31 | 175.62 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 33 | 179.67 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 12 |
| 34 | 180.03 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 45 | 181.23 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 46 | 181.28 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 58 | 181.41 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 96 | 182.09 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 98 | 182.61 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 99 | 182.87 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 101 | 183.09 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 102 | 183.13 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 248 | 186.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 250 | 186.31 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 254 | 186.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 272 | 186.51 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 289 | 186.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 313 | 186.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 340 | 187.27 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 342 | 187.28 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 388 | 187.59 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 487 | 187.67 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 630 | 189.28 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 651 | 189.53 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 660 | 189.59 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 712 | 189.75 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 725 | 190.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 743 | 190.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 751 | 190.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 798 | 190.79 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 806 | 190.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 861 | 191.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 862 | 191.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 869 | 191.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 875 | 191.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 879 | 191.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 903 | 191.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 916 | 191.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 919 | 191.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 934 | 191.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 938 | 191.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 941 | 191.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 962 | 191.78 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |