Os07g0150000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0150000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.44 | 0.457 | 3.44 | 0.31 | 0.825 | 0.936 | 0.727 | -0.191 | 0.0715 | 19.2 | 30.06 | 351 | -- | -- |
| 94.11 | 0.452 | 3.44 | 0.312 | 0.804 | 0.901 | 0.758 | -- | 0.0334 | 19.4 | 29.7 | 339 | -- | -- |
| 95.73 | 0.456 | 3.43 | 0.33 | 0.807 | 0.933 | -- | 0.365 | 0.0765 | 19.2 | 30.1 | 351 | -- | -- |
| 95.52 | 0.455 | 3.44 | 0.301 | 0.796 | 0.952 | -- | -- | 0.0312 | 19.4 | 29.7 | 351 | -- | -- |
| 117.37 | 0.505 | 3.44 | 0.206 | -- | 1.42 | -- | -0.0836 | -0.0372 | -- | 29.5 | 452 | -- | -- |
| 111.84 | 0.496 | 3.45 | 0.463 | 1.12 | -- | 1.32 | -- | 0.0234 | 18.7 | -- | -- | -- | -- |
| 116.27 | 0.505 | 3.45 | 0.441 | 1.13 | -- | -- | -- | 0.027 | 18.8 | -- | -- | -- | -- |
| 117.37 | 0.505 | 3.44 | 0.218 | -- | 1.41 | -- | -- | -0.0355 | -- | 29.5 | 452 | -- | -- |
| 97.68 | 0.46 | 3.45 | -- | 0.744 | 1.01 | -- | -- | -0.00164 | 19.5 | 29.7 | 358 | -- | -- |
| 182.5 | 0.631 | 3.43 | 0.416 | -- | -- | -- | -- | 0.0049 | -- | -- | -- | -- | -- |
| 121.4 | 0.515 | 3.46 | -- | 1.12 | -- | -- | -- | -0.0222 | 18.8 | -- | -- | -- | -- |
| 118.61 | 0.507 | 3.44 | -- | -- | 1.44 | -- | -- | -0.06 | -- | 29.48 | 455 | -- | -- |
| 187.06 | 0.638 | 3.44 | -- | -- | -- | -- | -- | -0.0412 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 3 | 87.99 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 4 |
| 8 | 88.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 15 | 89.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 27 | 90.05 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 35 | 90.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 64 | 91.02 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 17 |
| 226 | 93.16 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 9 |
| 291 | 93.60 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 7 |
| 299 | 93.72 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 305 | 93.81 | temperature | 30 | 270 | > th | dose independent | sin | 22 | NA |
| 334 | 93.94 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 405 | 94.22 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 487 | 94.59 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 547 | 94.97 | temperature | 30 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 571 | 95.04 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 583 | 95.13 | temperature | 25 | 10 | > th | dose dependent | sin | 15 | NA |
| 608 | 95.20 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 610 | 95.22 | temperature | 25 | 90 | > th | dose dependent | sin | 17 | NA |
| 615 | 95.25 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 618 | 95.27 | temperature | 30 | 270 | > th | dose dependent | sin | 0 | NA |
| 624 | 95.30 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 766 | 95.44 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 828 | 95.71 | radiation | 40 | 90 | < th | dose dependent | sin | 13 | NA |
| 891 | 95.88 | temperature | 30 | 270 | > th | dose dependent | no | NA | NA |
| 986 | 95.89 | radiation | 20 | 270 | > th | dose dependent | sin | 14 | NA |
| 995 | 95.97 | radiation | 1 | 90 | > th | dose dependent | sin | 13 | NA |