Os07g0147600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0147600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 602.11 | 1.15 | 4.98 | -3.86 | 1 | 2.47 | -1.44 | -1.56 | -0.242 | 3.39 | 1.023 | 1763 | 7.97 | -- |
| 595.07 | 1.14 | 4.97 | -3.76 | 0.952 | 2.53 | -1.07 | -- | -0.224 | 3.19 | 0.3699 | 1736 | 8 | -- |
| 600.58 | 1.14 | 4.96 | -3.87 | 1.01 | 2.63 | -- | -0.547 | -0.214 | 3.24 | 0.36 | 1740 | 7.84 | -- |
| 598.86 | 1.14 | 4.97 | -3.76 | 0.932 | 2.54 | -- | -- | -0.221 | 3.11 | 0.3615 | 1740 | 7.86 | -- |
| 636.16 | 1.17 | 4.95 | -3.63 | -- | 2.08 | -- | 0.468 | -0.164 | -- | 0.27 | 1665 | 7.11 | -- |
| 679.3 | 1.22 | 4.92 | -3.44 | 0.603 | -- | -0.446 | -- | 0.0822 | 24 | -- | -- | -- | -- |
| 680.1 | 1.22 | 4.92 | -3.42 | 0.606 | -- | -- | -- | 0.0851 | 23.8 | -- | -- | -- | -- |
| 611 | 1.15 | 4.95 | -3.83 | -- | 2.28 | -- | -- | -0.238 | -- | 0.27 | 2483 | 7.5 | -- |
| 888.42 | 1.39 | 4.93 | -- | 0.855 | 2.51 | -- | -- | 0.0725 | 3.21 | 7.81 | 1834 | 7.98 | -- |
| 703.21 | 1.24 | 4.91 | -3.4 | -- | -- | -- | -- | 0.0926 | -- | -- | -- | -- | -- |
| 987.93 | 1.47 | 4.83 | -- | 0.567 | -- | -- | -- | 0.466 | 23.4 | -- | -- | -- | -- |
| 838.19 | 1.35 | 4.9 | -- | -- | 2.9 | -- | -- | 0.00711 | -- | 6.381 | 6858 | 8.13 | -- |
| 1008.12 | 1.48 | 4.82 | -- | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 592.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 10 | 598.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 48 | 607.59 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 18 |
| 54 | 608.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 119 | 614.52 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 16 |
| 136 | 615.94 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 142 | 616.28 | temperature | 10 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 157 | 616.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 180 | 617.99 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 187 | 618.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 196 | 618.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 262 | 620.34 | temperature | 20 | 90 | > th | dose dependent | sin | 11 | NA |
| 285 | 620.70 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 335 | 621.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 350 | 621.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 356 | 621.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 388 | 622.40 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 393 | 622.43 | radiation | 30 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 396 | 622.44 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 401 | 622.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 402 | 622.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 404 | 622.54 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 412 | 622.60 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 460 | 623.09 | wind | 9 | 43200 | < th | dose independent | sin | 13 | NA |
| 473 | 623.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 488 | 623.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 496 | 623.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 8 |
| 516 | 623.51 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 521 | 623.54 | radiation | 1 | 270 | < th | dose dependent | sin | 14 | NA |
| 593 | 623.98 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 604 | 624.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 613 | 624.16 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 5 |
| 627 | 624.23 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 661 | 624.41 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 684 | 624.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 706 | 624.64 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 718 | 624.67 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 742 | 624.82 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 770 | 624.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 776 | 624.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 796 | 625.07 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 799 | 625.08 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 812 | 625.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 813 | 625.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 818 | 625.10 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 863 | 625.24 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 901 | 625.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 913 | 625.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 935 | 625.51 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 970 | 625.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 972 | 625.62 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |