Os07g0147500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Photosystem II 10 kDa polypeptide, chloroplast precursor.
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Os07g0147500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Photosystem II 10 kDa polypeptide, chloroplast precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1504.47 | 1.82 | 9.69 | 0.671 | 2.61 | 3.96 | 1.14 | -2.88 | 3.61 | 12.7 | 20.4 | 944 | 3.73 | 3.36 |
| 1486.28 | 1.8 | 9.62 | 1.61 | 2.58 | 3.87 | 0.23 | -- | 3.81 | 12.3 | 20.15 | 938 | 4.5 | 2.53 |
| 1482.3 | 1.79 | 9.67 | 0.976 | 2.58 | 4.03 | -- | -1.97 | 3.61 | 12.1 | 20.14 | 969 | 4 | 3.08 |
| 1482.05 | 1.79 | 9.61 | 1.58 | 2.42 | 4.02 | -- | -- | 3.79 | 11.9 | 20.19 | 939 | 4.52 | 2.52 |
| 1644.2 | 1.89 | 9.65 | 0.798 | -- | 5.19 | -- | -1.84 | 3.54 | -- | 19.92 | 845 | 4.4 | 3.1 |
| 2322.95 | 2.26 | 9.33 | 2.59 | 5.4 | -- | 2 | -- | 4.96 | 13.1 | -- | -- | -- | -- |
| 2339.18 | 2.26 | 9.32 | 2.66 | 5.39 | -- | -- | -- | 4.97 | 13 | -- | -- | -- | -- |
| 1638.85 | 1.89 | 9.67 | 1.33 | -- | 5.45 | -- | -- | 3.7 | -- | 19.92 | 847 | 4.4 | 3.05 |
| 1545.95 | 1.83 | 9.62 | -- | 2.32 | 4.19 | -- | -- | 3.63 | 11.7 | 20.2 | 941 | 4.45 | 2.7 |
| 4147.72 | 3.01 | 9.41 | 2.45 | -- | -- | -- | -- | 4.87 | -- | -- | -- | -- | -- |
| 2525.19 | 2.35 | 9.39 | -- | 5.35 | -- | -- | -- | 4.68 | 13 | -- | -- | -- | -- |
| 1684.25 | 1.91 | 9.71 | -- | -- | 5.56 | -- | -- | 3.55 | -- | 19.93 | 846 | 4.35 | 3.22 |
| 4306.42 | 3.06 | 9.47 | -- | -- | -- | -- | -- | 4.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1598.02 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 2 | 1602.45 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 4 | 1620.97 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 9 | 1643.08 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 15 | 1656.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 19 | 1661.23 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 24 | 1665.44 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 38 | 1674.14 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 41 | 1678.99 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 50 | 1682.84 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 58 | 1685.35 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 59 | 1685.35 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 73 | 1687.39 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 92 | 1688.47 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 100 | 1689.25 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 104 | 1689.60 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 140 | 1691.96 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 147 | 1693.56 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 157 | 1695.56 | radiation | 30 | 43200 | < th | dose independent | sin | 5 | NA |
| 162 | 1696.10 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 167 | 1696.51 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 181 | 1698.78 | radiation | 30 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 184 | 1699.16 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 206 | 1700.58 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 209 | 1700.61 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 222 | 1701.56 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 243 | 1702.94 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 281 | 1704.40 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 375 | 1705.04 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 383 | 1705.05 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 475 | 1706.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 499 | 1707.55 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 505 | 1707.93 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 510 | 1708.22 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 512 | 1708.45 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 513 | 1708.57 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 517 | 1708.69 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 593 | 1710.57 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 595 | 1710.61 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 683 | 1711.82 | radiation | 20 | 43200 | > th | dose dependent | sin | 5 | NA |
| 716 | 1712.38 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 769 | 1712.88 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 909 | 1714.98 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 966 | 1716.14 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 22 |