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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0146800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.41 (0.0422) R2 : 0.592
β1 : 2.41 (0.154) R2dD : 0.226 R2D : -0.0448
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.07 (0.0901) R2dN8 : 0.636 R2N8 : 0.366
σ : 0.792
deviance : 287.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.08 0.766 5.58 0.635 0.393 1.82 0.496 -11.1 2.17 13.2 30.03 3808 -- --
268.68 0.763 5.42 2.27 0.363 0.439 0.583 -- 2.02 13.6 29.63 7238 -- --
266.96 0.761 5.57 0.657 0.393 1.8 -- -11 2.16 12.8 29.9 3809 -- --
270.03 0.765 5.42 2.28 0.346 0.439 -- -- 2.01 13.2 29.6 7257 -- --
276.29 0.774 5.58 0.725 -- 1.66 -- -10.4 2.15 -- 30.2 4152 -- --
279.03 0.783 5.4 2.41 0.342 -- 0.484 -- 2.08 13.5 -- -- -- --
279.82 0.783 5.4 2.42 0.342 -- -- -- 2.08 12.9 -- -- -- --
277.56 0.776 5.42 2.27 -- 0.446 -- -- 2.01 -- 29.68 7321 -- --
293.65 0.798 5.59 -- 0.381 1.85 -- -- 1.22 12.9 15.4 47520 -- --
287.11 0.792 5.41 2.41 -- -- -- -- 2.07 -- -- -- -- --
434.31 0.975 5.46 -- 0.304 -- -- -- 1.81 12.6 -- -- -- --
302.68 0.81 5.6 -- -- 1.82 -- -- 1.22 -- 15.29 47520 -- --
440.1 0.979 5.47 -- -- -- -- -- 1.81 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.69 wind 1.0 43200 < th dose dependent rect. 23 6
2 257.03 humidity 80.0 43200 > th dose independent rect. 5 8
4 257.31 wind 1.0 43200 > th dose dependent rect. 11 1
5 257.37 humidity 80.0 43200 < th dose independent rect. 6 7
6 257.45 wind 9.0 43200 < th dose dependent rect. 11 1
8 257.69 wind 3.0 43200 > th dose independent rect. 8 4
9 257.81 wind 5.0 43200 < th dose dependent rect. 8 4
10 257.85 wind 7.0 43200 < th dose dependent rect. 21 1
13 257.88 humidity 80.0 43200 > th dose independent rect. 6 6
15 257.96 wind 3.0 43200 < th dose independent rect. 8 4
16 257.96 wind 1.0 43200 > th dose dependent rect. 21 1
17 257.97 wind 1.0 43200 > th dose dependent rect. 8 5
26 258.34 humidity 80.0 43200 < th dose independent rect. 5 9
28 258.35 wind 1.0 43200 < th dose dependent rect. 24 9
43 258.55 wind 1.0 43200 < th dose dependent sin 9 NA
45 258.57 wind 1.0 43200 < th dose dependent rect. 21 10
46 258.58 wind 1.0 43200 > th dose dependent rect. 19 18
49 258.61 wind 1.0 43200 < th dose dependent rect. 19 12
51 258.62 wind 1.0 43200 < th dose dependent rect. 19 14
61 258.70 wind 9.0 43200 < th dose dependent rect. 19 18
77 258.80 wind 3.0 43200 > th dose dependent sin 3 NA
78 258.81 humidity 80.0 43200 < th dose independent rect. 7 5
79 258.81 wind 3.0 43200 > th dose dependent rect. 5 10
93 258.87 wind 3.0 43200 > th dose dependent rect. 16 21
97 258.91 wind 9.0 14400 > th dose dependent rect. 9 2
99 258.91 wind 3.0 43200 > th dose dependent rect. 21 19
134 259.10 wind 3.0 43200 > th dose dependent rect. 24 16
153 259.17 humidity 80.0 43200 > th dose independent rect. 4 10
162 259.20 precipitation 0.1 43200 > th dose dependent rect. 13 1
176 259.26 wind 1.0 43200 < th dose dependent rect. 1 2
179 259.27 atmosphere 1000.0 43200 > th dose independent rect. 16 1
199 259.33 wind 9.0 43200 < th dose dependent rect. 3 11
206 259.36 wind 1.0 43200 < th dose independent rect. 24 4
214 259.37 wind 1.0 43200 < th dose dependent rect. 14 17
226 259.41 wind 9.0 43200 < th dose dependent sin 5 NA
236 259.46 precipitation 0.1 43200 > th dose independent rect. 19 2
257 259.51 wind 9.0 43200 < th dose dependent rect. 23 15
335 259.73 atmosphere 995.0 43200 < th dose independent rect. 16 7
339 259.74 wind 1.0 43200 > th dose dependent sin 9 NA
350 259.78 atmosphere 995.0 43200 > th dose independent rect. 16 7
366 259.81 wind 7.0 43200 < th dose independent rect. 23 17
381 259.84 atmosphere 1000.0 43200 < th dose independent rect. 3 2
382 259.84 precipitation 0.1 43200 < th dose independent rect. 19 2
383 259.84 wind 3.0 43200 > th dose independent rect. 21 15
384 259.84 precipitation 0.1 43200 < th dose dependent rect. 19 2
386 259.85 wind 5.0 43200 < th dose independent rect. 4 12
387 259.85 wind 7.0 43200 > th dose independent rect. 23 17
388 259.85 atmosphere 995.0 43200 < th dose dependent rect. 17 5
392 259.86 wind 7.0 43200 > th dose independent rect. 21 19
399 259.87 wind 5.0 43200 < th dose independent sin 2 NA
401 259.87 wind 7.0 43200 < th dose independent rect. 21 19
413 259.90 wind 5.0 43200 > th dose independent sin 2 NA
421 259.91 wind 7.0 43200 < th dose independent rect. 2 14
425 259.92 wind 7.0 43200 > th dose independent rect. 4 12
443 259.94 wind 5.0 43200 < th dose independent rect. 11 2
456 259.97 atmosphere 1000.0 43200 > th dose independent rect. 3 2
465 259.98 wind 9.0 43200 < th dose dependent rect. 20 9
483 260.01 wind 7.0 43200 < th dose independent rect. 7 9
484 260.01 wind 3.0 43200 < th dose independent rect. 21 15
498 260.03 wind 5.0 43200 < th dose independent rect. 15 22
511 260.06 wind 7.0 43200 > th dose independent rect. 8 8
515 260.06 wind 5.0 43200 > th dose independent rect. 15 22
520 260.07 wind 3.0 43200 > th dose independent rect. 4 9
554 260.11 atmosphere 995.0 43200 < th dose independent rect. 15 10
572 260.13 wind 1.0 43200 > th dose dependent rect. 20 9
577 260.14 atmosphere 1000.0 43200 < th dose independent rect. 16 1
580 260.14 atmosphere 995.0 43200 > th dose independent rect. 15 10
583 260.14 atmosphere 1000.0 43200 < th dose dependent rect. 5 1
651 260.24 atmosphere 995.0 43200 < th dose dependent rect. 12 11
707 260.33 wind 3.0 43200 < th dose independent rect. 3 10
756 260.38 atmosphere 995.0 43200 < th dose dependent rect. 15 8
807 260.46 wind 7.0 14400 > th dose independent rect. 7 4
880 260.58 atmosphere 1000.0 43200 < th dose independent rect. 1 1
884 260.58 wind 3.0 43200 > th dose independent rect. 24 13
906 260.61 atmosphere 1000.0 43200 > th dose independent rect. 1 1
952 260.66 wind 7.0 14400 < th dose independent rect. 7 4
955 260.66 atmosphere 995.0 43200 > th dose independent rect. 14 13
992 260.69 wind 3.0 43200 > th dose dependent rect. 20 3
994 260.70 wind 3.0 43200 > th dose independent sin 8 NA