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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0146700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0289) R2 : 0.458
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.19 (0.0608) R2dN8 : 0.592 R2N8 : 0.458
σ : 0.543
deviance : 135.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.91 0.533 2.97 -0.041 0.35 -0.307 -0.644 1.06 1.18 10.8 7.747 8 -- --
130.29 0.532 2.97 -0.0166 0.361 -0.33 -0.139 -- 1.19 10.6 8.327 7 -- --
129.76 0.531 2.97 -0.0402 0.307 -0.275 -- 0.763 1.19 10.3 22.63 7 -- --
130.29 0.532 2.97 -0.0352 0.313 -0.329 -- -- 1.19 10.3 24 8 -- --
134.41 0.54 2.98 -0.0556 -- -0.0839 -- 0.693 1.19 -- 23.05 6 -- --
132.11 0.539 2.97 -0.0275 0.238 -- -0.116 -- 1.19 9.54 -- -- -- --
132.16 0.538 2.97 -0.032 0.239 -- -- -- 1.19 9.47 -- -- -- --
135 0.544 2.98 -0.0387 -- -0.18 -- -- 1.19 -- 35 5 -- --
130.32 0.532 2.97 -- 0.314 -0.331 -- -- 1.19 10.3 23.69 8 -- --
135.51 0.544 2.98 -0.0336 -- -- -- -- 1.19 -- -- -- -- --
132.19 0.538 2.97 -- 0.239 -- -- -- 1.19 9.48 -- -- -- --
135.04 0.543 2.98 -- -- -0.178 -- -- 1.19 -- 35 5 -- --
135.54 0.543 2.98 -- -- -- -- -- 1.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.10 humidity 80.0 270 > th dose dependent rect. 12 1
3 117.39 humidity 90.0 270 > th dose independent rect. 11 2
4 117.47 radiation 1.0 270 < th dose independent rect. 12 2
5 117.47 radiation 1.0 270 < th dose dependent rect. 12 2
93 121.99 radiation 1.0 10 < th dose independent rect. 13 3
153 123.69 humidity 80.0 90 > th dose independent rect. 12 4
179 124.45 radiation 1.0 10 < th dose independent rect. 13 1
189 124.45 radiation 1.0 10 < th dose dependent rect. 13 1
202 124.65 temperature 25.0 270 < th dose independent rect. 12 1
216 124.99 temperature 25.0 90 < th dose independent rect. 12 4
278 126.00 radiation 40.0 10 < th dose dependent rect. 6 11
327 126.49 temperature 25.0 10 > th dose independent rect. 11 18
351 126.68 temperature 25.0 10 > th dose independent rect. 20 9
352 126.68 radiation 30.0 10 < th dose independent rect. 6 11
358 126.74 temperature 25.0 10 > th dose independent rect. 6 5
377 126.85 humidity 80.0 10 > th dose independent rect. 14 1
383 126.89 temperature 25.0 10 > th dose independent rect. 22 7
392 126.93 temperature 25.0 10 < th dose independent rect. 13 14
398 126.94 temperature 25.0 90 < th dose independent rect. 12 19
403 126.96 radiation 20.0 270 < th dose independent rect. 12 1
464 127.18 wind 1.0 30 > th dose independent rect. 7 23
471 127.20 wind 3.0 30 < th dose dependent rect. 6 1
472 127.20 radiation 40.0 10 < th dose dependent rect. 6 22
475 127.22 temperature 25.0 10 > th dose independent rect. 24 5
484 127.23 atmosphere 1005.0 30 > th dose dependent rect. 6 1
486 127.24 wind 9.0 4320 < th dose independent rect. 7 1
509 127.32 humidity 80.0 30 > th dose dependent rect. 6 1
533 127.39 radiation 1.0 30 > th dose dependent rect. 6 1
536 127.40 wind 7.0 10 > th dose dependent rect. 16 1
537 127.40 temperature 25.0 10 > th dose dependent rect. 1 4
540 127.41 temperature 30.0 30 < th dose dependent rect. 6 1
550 127.48 atmosphere 1000.0 90 > th dose independent rect. 3 10
554 127.49 wind 3.0 30 < th dose dependent rect. 6 3
612 127.68 wind 1.0 90 > th dose independent rect. 3 10
613 127.68 radiation 40.0 90 < th dose independent rect. 13 14
617 127.70 wind 3.0 30 < th dose independent rect. 6 1
619 127.70 radiation 30.0 10 < th dose independent rect. 6 22
638 127.75 temperature 20.0 30 > th dose dependent rect. 6 5
644 127.77 temperature 25.0 270 < th dose independent rect. 8 1
649 127.79 temperature 20.0 270 > th dose dependent rect. 6 1
651 127.79 radiation 20.0 10 < th dose dependent rect. 6 1
654 127.80 precipitation 0.1 90 < th dose independent rect. 3 10
658 127.80 precipitation 0.1 90 < th dose dependent rect. 3 10
660 127.81 wind 9.0 90 < th dose independent rect. 13 14
663 127.81 radiation 1.0 30 > th dose dependent rect. 18 13
669 127.83 temperature 25.0 10 < th dose independent rect. 13 19
674 127.84 temperature 25.0 10 > th dose independent rect. 6 1
679 127.85 temperature 10.0 90 > th dose independent rect. 3 10
681 127.85 atmosphere 1015.0 90 < th dose independent rect. 3 10
682 127.85 temperature 10.0 90 > th dose independent rect. 13 14
683 127.85 atmosphere 995.0 90 > th dose independent rect. 13 14
684 127.86 radiation 1.0 1440 > th dose independent rect. 11 1
689 127.88 wind 1.0 30 > th dose independent rect. 6 1
691 127.88 temperature 10.0 1440 > th dose independent rect. 7 1
695 127.88 temperature 30.0 1440 < th dose independent rect. 7 1
699 127.88 humidity 50.0 1440 > th dose independent rect. 7 1
704 127.88 atmosphere 1005.0 30 > th dose independent rect. 6 1
705 127.88 atmosphere 995.0 1440 > th dose independent rect. 7 1
706 127.88 atmosphere 1015.0 1440 < th dose independent rect. 7 1
710 127.88 temperature 25.0 10 > th dose independent rect. 9 20
712 127.88 wind 1.0 10 > th dose independent rect. 9 21
713 127.88 temperature 10.0 1440 > th dose independent rect. 8 23
717 127.89 humidity 80.0 30 > th dose independent rect. 6 1
719 127.89 radiation 1.0 30 > th dose independent rect. 6 1
728 127.90 temperature 10.0 30 > th dose independent rect. 6 1
730 127.90 temperature 30.0 30 < th dose independent rect. 6 1
731 127.90 humidity 50.0 30 > th dose independent rect. 6 1
736 127.90 atmosphere 1015.0 30 < th dose independent rect. 6 1
737 127.90 radiation 20.0 30 < th dose independent rect. 6 1
740 127.90 precipitation 0.1 30 < th dose independent rect. 6 1
744 127.90 temperature 10.0 30 > th dose independent rect. 7 23
745 127.90 radiation 40.0 10 < th dose independent rect. 10 23
747 127.90 precipitation 0.1 30 < th dose dependent rect. 6 1
750 127.91 humidity 90.0 30 < th dose independent rect. 6 1
755 127.91 temperature 25.0 90 > th dose independent rect. 11 14
763 127.92 radiation 40.0 10 < th dose independent rect. 1 23
784 127.94 precipitation 0.1 90 < th dose independent rect. 13 14
785 127.94 precipitation 0.1 90 < th dose dependent rect. 13 14
786 127.94 radiation 40.0 90 < th dose dependent rect. 12 15
816 127.98 radiation 40.0 10 < th dose independent rect. 13 14
853 128.00 wind 1.0 90 > th dose independent rect. 13 14
887 128.01 atmosphere 1000.0 30 > th dose independent rect. 7 23
895 128.03 wind 3.0 10 > th dose independent rect. 7 6
897 128.03 humidity 80.0 10 > th dose independent rect. 6 11
899 128.03 precipitation 0.1 30 < th dose independent rect. 7 23
904 128.03 radiation 40.0 10 < th dose dependent rect. 13 14
905 128.03 precipitation 0.1 30 < th dose dependent rect. 7 23
912 128.05 wind 9.0 90 < th dose independent rect. 3 10
914 128.05 wind 1.0 30 > th dose independent rect. 24 13
917 128.06 temperature 10.0 30 > th dose dependent rect. 6 1
919 128.07 temperature 20.0 720 > th dose independent rect. 5 2
924 128.07 wind 3.0 30 < th dose dependent rect. 6 5
929 128.08 temperature 25.0 30 > th dose dependent rect. 3 8
938 128.10 radiation 1.0 1440 > th dose independent rect. 13 1
949 128.11 humidity 50.0 90 > th dose independent rect. 13 14