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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0145400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.018) R2 : 0.00144
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0308 (0.038) R2dN8 : 0.00186 R2N8 : 0.00144
σ : 0.34
deviance : 52.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.16 0.333 3.03 -0.0044 0.102 -0.184 -0.416 0.0113 -0.0291 4.39 19.73 9 -- --
50.16 0.33 3.03 -0.00479 0.102 -0.183 -0.411 -- -0.0291 4.44 19.73 8 -- --
50.59 0.331 3.03 0.00917 0.101 -0.186 -- -0.0644 -0.0275 4.48 19.74 8 -- --
50.62 0.331 3.03 -0.00147 0.0982 -0.18 -- -- -0.027 4.59 19.74 8 -- --
51.04 0.333 3.03 0.00482 -- -0.154 -- -0.071 -0.0271 -- 19.74 8 -- --
51.82 0.337 3.03 -0.000516 0.135 -- 0.0535 -- -0.031 9.85 -- -- -- --
51.83 0.337 3.03 0.0012 0.136 -- -- -- -0.0311 9.62 -- -- -- --
51.08 0.333 3.03 0.00191 -- -0.153 -- -- -0.0254 -- 19.72 8 -- --
50.62 0.331 3.03 -- 0.0981 -0.18 -- -- -0.0269 4.58 19.73 8 -- --
52.92 0.34 3.03 9.91e-05 -- -- -- -- -0.0308 -- -- -- -- --
51.83 0.337 3.03 -- 0.136 -- -- -- -0.0312 9.62 -- -- -- --
51.08 0.333 3.03 -- -- -0.153 -- -- -0.0256 -- 19.72 8 -- --
52.92 0.34 3.03 -- -- -- -- -- -0.0308 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.55 humidity 50.0 90 < th dose independent rect. 12 2
4 46.65 humidity 50.0 90 < th dose dependent rect. 13 1
7 46.67 atmosphere 1000.0 90 < th dose independent rect. 12 1
8 46.67 atmosphere 1000.0 90 < th dose dependent rect. 12 1
27 47.82 atmosphere 1000.0 30 > th dose independent rect. 3 23
29 47.99 atmosphere 1005.0 30 > th dose dependent rect. 2 1
30 48.00 wind 3.0 30 < th dose dependent rect. 2 1
31 48.01 wind 1.0 30 < th dose independent rect. 2 1
35 48.01 temperature 20.0 30 > th dose dependent rect. 2 1
39 48.02 atmosphere 1005.0 30 > th dose independent rect. 2 1
42 48.02 temperature 10.0 30 > th dose dependent rect. 2 1
47 48.03 temperature 10.0 30 > th dose independent rect. 2 1
50 48.03 temperature 25.0 30 < th dose independent rect. 2 1
52 48.03 humidity 50.0 30 > th dose independent rect. 2 1
56 48.03 atmosphere 995.0 30 > th dose independent rect. 2 1
57 48.03 atmosphere 1010.0 30 < th dose independent rect. 2 1
59 48.03 radiation 1.0 30 < th dose independent rect. 2 1
64 48.03 precipitation 0.1 30 < th dose independent rect. 2 1
65 48.03 temperature 10.0 30 > th dose independent rect. 3 23
66 48.03 humidity 50.0 30 > th dose dependent rect. 2 1
70 48.03 radiation 1.0 30 < th dose dependent rect. 2 1
75 48.03 precipitation 0.1 30 < th dose dependent rect. 2 1
78 48.05 temperature 30.0 30 < th dose dependent rect. 2 1
79 48.05 atmosphere 1015.0 30 < th dose dependent rect. 2 1
92 48.10 wind 1.0 30 > th dose independent rect. 2 1
130 48.16 precipitation 0.1 30 < th dose independent rect. 3 23
137 48.16 precipitation 0.1 30 < th dose dependent rect. 3 23
143 48.26 wind 9.0 1440 < th dose independent rect. 3 1
144 48.26 temperature 10.0 1440 > th dose independent rect. 3 1
147 48.26 temperature 30.0 1440 < th dose independent rect. 3 1
151 48.26 humidity 50.0 1440 > th dose independent rect. 3 1
160 48.26 atmosphere 995.0 1440 > th dose independent rect. 3 1
161 48.26 radiation 1.0 1440 < th dose independent rect. 3 1
181 48.26 temperature 10.0 1440 > th dose independent rect. 4 23
184 48.26 radiation 1.0 1440 < th dose dependent rect. 3 1
205 48.30 wind 9.0 30 < th dose independent rect. 3 23
207 48.32 radiation 20.0 30 < th dose dependent rect. 3 23
208 48.33 temperature 30.0 90 > th dose dependent rect. 13 1
228 48.54 atmosphere 1000.0 270 < th dose independent rect. 10 4
253 48.69 radiation 20.0 10 < th dose independent rect. 3 23
280 48.90 radiation 30.0 10 < th dose independent rect. 3 8
288 48.98 temperature 25.0 270 > th dose independent rect. 23 4
289 48.98 radiation 40.0 90 < th dose independent rect. 11 16
299 49.07 temperature 30.0 10 > th dose independent rect. 14 1
311 49.17 humidity 50.0 30 > th dose independent rect. 3 23
316 49.19 temperature 25.0 270 > th dose dependent rect. 23 4
318 49.21 temperature 30.0 30 < th dose independent rect. 3 23
321 49.22 radiation 40.0 90 < th dose independent rect. 9 18
322 49.23 wind 1.0 30 < th dose independent rect. 13 1
334 49.28 atmosphere 1010.0 30 < th dose independent rect. 3 8
342 49.30 radiation 40.0 30 < th dose independent rect. 11 3
351 49.32 wind 1.0 30 < th dose dependent rect. 13 1
376 49.38 radiation 20.0 10 < th dose independent rect. 14 21
380 49.39 radiation 40.0 90 < th dose independent rect. 9 5
390 49.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
404 49.42 humidity 50.0 30 > th dose dependent rect. 3 8
415 49.45 atmosphere 1000.0 720 > th dose independent rect. 3 8
421 49.46 atmosphere 1010.0 270 < th dose dependent rect. 9 5
423 49.46 radiation 40.0 10 < th dose dependent rect. 3 8
441 49.51 humidity 50.0 30 > th dose dependent rect. 3 23
452 49.55 atmosphere 1005.0 10 < th dose independent rect. 10 5
461 49.56 wind 9.0 30 < th dose independent rect. 11 16
467 49.57 wind 9.0 30 < th dose independent rect. 3 8
468 49.57 temperature 10.0 30 > th dose independent rect. 3 8
470 49.57 humidity 50.0 30 > th dose independent rect. 3 8
471 49.57 atmosphere 995.0 30 > th dose independent rect. 3 8
473 49.57 temperature 10.0 30 > th dose independent rect. 11 16
474 49.57 precipitation 0.1 30 < th dose independent rect. 11 16
482 49.57 precipitation 0.1 30 < th dose dependent rect. 11 16
497 49.58 temperature 10.0 30 > th dose dependent rect. 11 16
507 49.60 humidity 70.0 10 > th dose independent rect. 3 7
531 49.61 wind 1.0 30 < th dose independent rect. 24 3
544 49.62 humidity 70.0 30 > th dose dependent rect. 3 23
549 49.63 radiation 40.0 90 < th dose independent rect. 23 15
555 49.64 radiation 40.0 90 < th dose independent rect. 19 19
563 49.65 precipitation 0.1 30 < th dose independent rect. 3 8
565 49.65 precipitation 0.1 30 < th dose dependent rect. 3 8
622 49.71 temperature 30.0 270 > th dose independent rect. 12 1
646 49.72 radiation 30.0 10 < th dose dependent rect. 15 20
650 49.73 atmosphere 1015.0 30 < th dose independent rect. 11 16
671 49.74 wind 9.0 30 < th dose dependent rect. 11 16
683 49.76 wind 3.0 270 < th dose independent rect. 11 2
686 49.76 temperature 30.0 270 > th dose dependent rect. 9 5
704 49.77 wind 1.0 720 < th dose independent rect. 3 1
728 49.79 humidity 90.0 90 < th dose independent rect. 2 1
745 49.80 wind 9.0 30 < th dose dependent rect. 3 8
752 49.81 wind 1.0 720 < th dose dependent rect. 3 1
777 49.83 humidity 80.0 30 < th dose independent rect. 11 3
779 49.83 temperature 10.0 1440 > th dose independent rect. 4 8
784 49.83 temperature 10.0 1440 > th dose independent rect. 12 16
796 49.83 atmosphere 1005.0 30 > th dose dependent rect. 2 6
817 49.85 temperature 30.0 270 > th dose dependent rect. 10 1
823 49.85 temperature 10.0 30 > th dose dependent rect. 3 8
838 49.86 humidity 90.0 90 < th dose independent rect. 1 13
852 49.87 temperature 20.0 30 > th dose dependent rect. 11 3
881 49.89 atmosphere 995.0 30 > th dose independent rect. 11 16
892 49.90 temperature 30.0 30 < th dose independent rect. 3 8
895 49.90 radiation 20.0 10 < th dose independent rect. 21 23
899 49.90 atmosphere 995.0 30 > th dose dependent rect. 3 8
918 49.91 wind 1.0 30 < th dose independent rect. 2 4
921 49.91 wind 1.0 10 > th dose independent rect. 14 16
947 49.92 atmosphere 995.0 90 > th dose dependent rect. 3 16
949 49.93 humidity 70.0 90 < th dose independent rect. 6 3
970 49.93 temperature 10.0 90 > th dose dependent rect. 19 8
980 49.94 wind 9.0 720 < th dose independent rect. 19 8
1000 49.95 atmosphere 995.0 90 > th dose independent rect. 3 16