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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0143900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0434) R2 : 0.14
β1 : -0.0578 (0.157) R2dD : 0.000301 R2D : -0.0233
β2 : -- (--) R2dC : -- R2C : --
β3 : 12.1 (1.5) R2dE : 1.32 R2E : -1.05
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -37.9 (4.99) R2dD*E : 1.17 R2D*E : -1.2
γ1 : -0.232 (0.0912) R2dN8 : 0.0164 R2N8 : 0.0117
σ : 0.797
deviance : 292.84
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.1186
memory length : 362
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0167
open length of G : 2.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.06 0.804 3.1 0.0256 0.056 12.3 -0.814 -40.3 -0.223 16.7 0.1092 286 24 2.03
357.07 0.88 3.18 0.475 0.0583 6.22 0.0827 -- -0.484 19.6 0.2758 34 23.9 3.53
292.58 0.797 3.12 -0.0799 0.0796 12.5 -- -38.9 -0.229 17.4 0.1158 362 24 2.08
324.46 0.839 3.07 0.121 0.0997 3.54 -- -- -0.194 16.5 0.4233 18 0.65 3.1
292.84 0.797 3.13 -0.0578 -- 12.1 -- -37.9 -0.232 -- 0.1186 362 0.0167 2.1
333 0.855 3.07 0.0511 0.112 -- -0.00592 -- -0.286 0.158 -- -- -- --
333 0.855 3.07 0.0514 0.112 -- -- -- -0.286 0.144 -- -- -- --
321.18 0.835 3.06 0.0756 -- 2.52 -- -- -0.268 -- 0.3168 20 0.783 2.91
319.51 0.833 3.04 -- 0.101 2.93 -- -- -0.296 4.16 0.2306 24 23.9 2.04
333.79 0.854 3.06 0.055 -- -- -- -- -0.285 -- -- -- -- --
333.06 0.854 3.07 -- 0.113 -- -- -- -0.292 0.169 -- -- -- --
318.06 0.831 3.06 -- -- 3.98 -- -- -0.28 -- 0.2327 22 23.9 2.05
333.87 0.853 3.07 -- -- -- -- -- -0.291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.22 precipitation 0.1 270 > th dose independent rect. 24 2
2 293.22 precipitation 0.1 270 > th dose dependent rect. 24 2
7 299.08 temperature 20.0 270 < th dose dependent rect. 24 3
8 299.48 temperature 20.0 720 < th dose independent rect. 16 1
9 299.76 humidity 80.0 10 < th dose independent rect. 22 2
12 299.86 humidity 80.0 10 < th dose dependent rect. 22 2
13 299.90 wind 1.0 90 < th dose independent rect. 12 1
15 300.30 humidity 80.0 90 < th dose dependent rect. 22 1
23 300.90 humidity 80.0 270 < th dose independent rect. 24 1
24 300.90 humidity 80.0 10 < th dose independent rect. 24 4
28 300.90 humidity 80.0 270 < th dose dependent rect. 24 1
29 300.91 humidity 80.0 10 < th dose dependent rect. 24 4
63 301.79 wind 1.0 90 < th dose dependent rect. 12 1
64 303.17 wind 1.0 270 < th dose dependent rect. 2 1
66 303.55 atmosphere 1005.0 90 < th dose dependent rect. 12 1
67 303.63 wind 1.0 270 < th dose independent rect. 2 1
69 303.67 temperature 20.0 720 < th dose dependent rect. 16 1
74 305.01 humidity 90.0 30 > th dose independent rect. 13 3
78 305.01 humidity 90.0 30 > th dose dependent rect. 13 3
84 305.06 humidity 90.0 30 > th dose independent rect. 13 1
88 305.06 humidity 90.0 30 > th dose dependent rect. 13 1
121 306.60 temperature 20.0 30 < th dose dependent rect. 1 7
129 307.38 atmosphere 1005.0 10 < th dose dependent rect. 12 3
134 307.52 humidity 80.0 30 < th dose dependent rect. 20 5
169 308.42 wind 3.0 10 < th dose dependent rect. 12 3
175 308.75 atmosphere 1005.0 90 < th dose independent rect. 1 4
187 309.52 temperature 20.0 90 < th dose independent rect. 1 4
190 309.63 atmosphere 1005.0 270 < th dose independent rect. 1 1
196 309.90 temperature 20.0 270 < th dose independent rect. 20 1
204 310.24 temperature 20.0 270 < th dose independent rect. 1 1
214 310.76 atmosphere 1005.0 10 < th dose independent rect. 12 18
224 311.00 atmosphere 1005.0 10 < th dose independent rect. 24 6
272 311.77 wind 3.0 10 < th dose independent rect. 13 2
305 312.63 atmosphere 1005.0 10 < th dose independent rect. 19 11
315 312.78 temperature 20.0 10 < th dose independent rect. 1 8
336 313.24 atmosphere 1005.0 90 < th dose independent rect. 19 11
350 313.52 humidity 90.0 270 > th dose independent rect. 24 1
405 314.12 atmosphere 1005.0 90 < th dose independent rect. 19 20
420 314.31 atmosphere 1005.0 270 < th dose dependent rect. 10 4
425 314.39 humidity 90.0 720 > th dose independent rect. 18 1
459 314.88 wind 3.0 720 < th dose dependent rect. 20 1
462 314.97 atmosphere 1005.0 90 < th dose independent rect. 3 2
463 314.97 humidity 90.0 270 > th dose independent rect. 23 4
476 315.17 atmosphere 1005.0 90 < th dose independent rect. 24 14
481 315.26 temperature 20.0 1440 > th dose independent rect. 15 1
488 315.33 atmosphere 1005.0 10 > th dose independent sin 10 NA
497 315.39 humidity 90.0 720 > th dose dependent rect. 18 2
509 315.53 atmosphere 1000.0 270 < th dose independent rect. 11 2
538 315.75 atmosphere 1005.0 10 < th dose independent sin 10 NA
549 315.81 temperature 20.0 270 < th dose dependent rect. 20 1
552 315.83 humidity 90.0 270 > th dose dependent rect. 24 1
572 315.99 precipitation 0.1 10 > th dose independent rect. 19 7
577 315.99 precipitation 0.1 10 > th dose dependent rect. 19 7
587 316.05 precipitation 0.1 10 > th dose independent rect. 21 5
591 316.05 precipitation 0.1 10 > th dose dependent rect. 21 5
603 316.12 precipitation 0.1 10 > th dose independent rect. 1 1
614 316.12 precipitation 0.1 10 > th dose dependent rect. 1 1
683 316.37 temperature 20.0 270 < th dose independent rect. 11 11
689 316.38 wind 3.0 10 < th dose dependent rect. 11 7
793 316.91 atmosphere 1005.0 10 > th dose independent rect. 17 23
799 316.94 wind 5.0 720 < th dose independent rect. 16 3
802 316.98 precipitation 0.1 10 > th dose independent rect. 7 19
808 316.98 precipitation 0.1 10 > th dose dependent rect. 7 19
830 317.11 wind 3.0 720 < th dose independent rect. 20 1
861 317.23 temperature 15.0 1440 < th dose dependent rect. 4 1
883 317.39 radiation 10.0 10 < th dose dependent rect. 14 1
895 317.45 humidity 90.0 90 > th dose dependent rect. 24 4
916 317.59 humidity 90.0 1440 < th dose independent rect. 18 2
936 317.70 wind 3.0 720 < th dose independent rect. 10 12
948 317.74 temperature 20.0 1440 > th dose independent rect. 13 4