Os07g0143600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0143600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.91 | 0.598 | 6.21 | -0.896 | 2.45 | -2.54 | -2.64 | -2.76 | -0.749 | 22.9 | 21 | 5082 | -- | -- |
| 167.03 | 0.602 | 6.1 | -0.689 | 2.43 | -1.79 | -2.67 | -- | -0.635 | 22.9 | 22 | 4263 | -- | -- |
| 190.83 | 0.643 | 6.22 | -0.869 | 2.46 | -2.54 | -- | -3.01 | -0.764 | 23.1 | 21.1 | 5116 | -- | -- |
| 195.39 | 0.651 | 6.09 | -0.637 | 2.48 | -1.81 | -- | -- | -0.604 | 23.1 | 22.1 | 3779 | -- | -- |
| 550.46 | 1.09 | 6.16 | -0.824 | -- | -2.56 | -- | -2.88 | -0.789 | -- | 20.7 | 4561 | -- | -- |
| 262.49 | 0.76 | 6.25 | -1.7 | 2.36 | -- | -2.75 | -- | -1.29 | 22.9 | -- | -- | -- | -- |
| 293.81 | 0.803 | 6.24 | -1.59 | 2.37 | -- | -- | -- | -1.29 | 23.1 | -- | -- | -- | -- |
| 514.66 | 1.06 | 6.09 | -1.16 | -- | -1.41 | -- | -- | -0.869 | -- | 22.1 | 3779 | -- | -- |
| 201.52 | 0.661 | 6.07 | -- | 2.41 | -2.07 | -- | -- | -0.483 | 23.1 | 22.09 | 5138 | -- | -- |
| 644.87 | 1.19 | 6.18 | -1.54 | -- | -- | -- | -- | -1.27 | -- | -- | -- | -- | -- |
| 360.5 | 0.888 | 6.2 | -- | 2.36 | -- | -- | -- | -1.11 | 23 | -- | -- | -- | -- |
| 549.09 | 1.09 | 6.06 | -- | -- | -1.53 | -- | -- | -0.71 | -- | 22.1 | 3779 | -- | -- |
| 707.12 | 1.24 | 6.14 | -- | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 3 | 157.69 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 4 |
| 8 | 158.10 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 14 | 158.29 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 32 | 158.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 56 | 158.89 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 9 |
| 225 | 160.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 230 | 160.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 232 | 160.65 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 247 | 160.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 248 | 160.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 310 | 161.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 331 | 161.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 362 | 161.72 | temperature | 15 | 4320 | > th | dose dependent | sin | 10 | NA |
| 469 | 162.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 474 | 162.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 493 | 162.71 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 517 | 162.85 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 518 | 162.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 631 | 163.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 697 | 163.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 992 | 165.42 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |