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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0142700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.75 (0.0361) R2 : 0.000501
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0364 (0.0761) R2dN8 : 0.000647 R2N8 : 0.000501
σ : 0.681
deviance : 212.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.99 0.671 2.47 1.43 0.0417 -10.2 -0.922 61 0.0205 3.58 999.4 78 -- --
208.87 0.678 2.76 -0.19 0.0319 0.0892 -0.968 -- 0.014 3.59 999.4 78 -- --
205.63 0.668 2.49 1.41 0.0577 -11.3 -- 68.3 0.0165 0.864 998.9 86 -- --
211.41 0.682 2.76 -0.178 0.071 0.115 -- -- 0.0215 22.7 1001 80 -- --
205.81 0.668 2.48 1.4 -- -12.1 -- 72.9 0.00764 -- 998.7 86 -- --
208.93 0.678 2.76 -0.184 0.0314 -- -0.97 -- 0.0116 3.6 -- -- -- --
211.53 0.681 2.76 -0.168 0.0705 -- -- -- 0.0175 22.7 -- -- -- --
211.59 0.677 2.75 -0.182 -- 0.165 -- -- 0.0239 -- 1001 84 -- --
212.15 0.678 2.75 -- 0.0689 0.113 -- -- 0.0382 22.6 1001 91 -- --
211.84 0.68 2.75 -0.167 -- -- -- -- 0.0179 -- -- -- -- --
212.28 0.682 2.75 -- 0.0693 -- -- -- 0.0362 22.5 -- -- -- --
212.44 0.679 2.75 -- -- 0.12 -- -- 0.0415 -- 1001 84 -- --
212.57 0.681 2.75 -- -- -- -- -- 0.0364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.56 atmosphere 1000.0 30 < th dose dependent rect. 15 1
12 191.78 atmosphere 1000.0 10 < th dose independent rect. 15 1
23 191.84 atmosphere 1000.0 10 < th dose dependent rect. 15 7
26 191.86 atmosphere 1000.0 10 < th dose dependent rect. 15 5
99 196.54 temperature 25.0 30 > th dose dependent rect. 20 3
101 196.71 temperature 25.0 30 > th dose independent rect. 20 3
120 197.81 temperature 20.0 30 < th dose independent rect. 7 1
123 197.81 temperature 20.0 30 < th dose dependent rect. 7 1
127 197.98 humidity 80.0 30 > th dose dependent rect. 20 1
130 198.08 atmosphere 1015.0 30 < th dose dependent rect. 20 1
133 198.12 humidity 80.0 10 > th dose independent rect. 20 1
135 198.17 temperature 15.0 10 > th dose dependent rect. 20 1
138 198.21 wind 5.0 30 < th dose independent rect. 20 1
140 198.22 wind 9.0 30 < th dose dependent rect. 20 1
143 198.24 wind 1.0 30 > th dose independent rect. 20 1
144 198.24 wind 9.0 30 < th dose independent rect. 20 1
145 198.24 temperature 10.0 30 > th dose independent rect. 20 1
148 198.24 temperature 30.0 30 < th dose independent rect. 20 1
149 198.24 humidity 50.0 30 > th dose independent rect. 20 1
152 198.24 atmosphere 995.0 30 > th dose independent rect. 20 1
153 198.24 atmosphere 1010.0 30 < th dose independent rect. 20 1
155 198.24 radiation 1.0 30 < th dose independent rect. 20 1
160 198.24 precipitation 0.1 30 < th dose independent rect. 20 1
163 198.24 temperature 10.0 30 > th dose independent rect. 21 23
164 198.24 radiation 1.0 30 < th dose dependent rect. 20 1
169 198.24 precipitation 0.1 30 < th dose dependent rect. 20 1
179 198.36 atmosphere 995.0 30 > th dose dependent rect. 20 1
184 198.43 humidity 50.0 10 > th dose independent rect. 21 23
185 198.43 wind 1.0 30 > th dose dependent rect. 20 1
187 198.45 temperature 30.0 30 < th dose dependent rect. 20 1
221 198.64 radiation 40.0 4320 < th dose dependent rect. 21 1
224 198.66 humidity 90.0 30 < th dose independent rect. 20 1
228 198.68 temperature 10.0 1440 > th dose independent rect. 21 1
231 198.68 temperature 30.0 1440 < th dose independent rect. 21 1
235 198.68 humidity 50.0 1440 > th dose independent rect. 21 1
241 198.68 atmosphere 995.0 1440 > th dose independent rect. 21 1
242 198.68 radiation 1.0 1440 < th dose independent rect. 21 1
262 198.68 temperature 10.0 1440 > th dose independent rect. 22 23
269 198.72 wind 1.0 90 < th dose independent rect. 14 1
286 198.98 humidity 90.0 30 < th dose dependent rect. 20 1
293 199.14 radiation 1.0 30 < th dose dependent rect. 7 1
337 199.92 wind 7.0 1440 > th dose independent rect. 1 2
338 199.92 wind 7.0 1440 > th dose dependent rect. 1 2
359 200.21 atmosphere 995.0 10 > th dose independent rect. 21 23
370 200.38 wind 1.0 10 < th dose dependent rect. 1 1
381 200.51 temperature 30.0 10 > th dose dependent rect. 14 2
392 200.68 humidity 50.0 30 < th dose independent rect. 16 2
395 200.68 humidity 50.0 10 < th dose independent rect. 11 5
429 200.69 humidity 50.0 30 < th dose dependent rect. 16 2
450 200.71 humidity 50.0 10 < th dose dependent rect. 14 2
452 200.72 humidity 50.0 10 < th dose independent rect. 14 2
497 200.74 temperature 25.0 30 > th dose dependent rect. 20 11
520 200.79 wind 1.0 90 < th dose dependent rect. 14 1
525 200.83 precipitation 0.1 30 < th dose independent rect. 21 23
526 200.83 precipitation 0.1 30 < th dose dependent rect. 21 23
544 200.92 atmosphere 1000.0 90 < th dose dependent sin 18 NA
548 200.96 wind 3.0 10 < th dose dependent rect. 16 1
573 201.10 wind 9.0 30 < th dose independent rect. 21 23
602 201.22 radiation 30.0 14400 < th dose dependent rect. 23 1
641 201.37 wind 1.0 10 < th dose dependent rect. 11 15
680 201.54 atmosphere 1005.0 10 > th dose dependent rect. 20 3
688 201.59 humidity 90.0 10 > th dose independent rect. 1 9
720 201.71 wind 1.0 10 < th dose independent rect. 1 1
736 201.82 temperature 25.0 30 > th dose independent rect. 22 1
739 201.84 wind 3.0 30 < th dose independent rect. 22 1
740 201.84 temperature 25.0 30 > th dose dependent rect. 22 1
742 201.87 wind 9.0 1440 < th dose independent rect. 23 1
743 201.87 temperature 10.0 1440 > th dose independent rect. 23 1
746 201.87 temperature 30.0 1440 < th dose independent rect. 23 1
750 201.87 humidity 50.0 1440 > th dose independent rect. 23 1
760 201.87 atmosphere 995.0 1440 > th dose independent rect. 23 1
761 201.87 radiation 1.0 1440 < th dose independent rect. 23 1
781 201.87 temperature 10.0 1440 > th dose independent rect. 24 23
784 201.87 radiation 1.0 1440 < th dose dependent rect. 23 1
825 201.94 atmosphere 1005.0 30 > th dose dependent rect. 22 1
833 201.99 wind 5.0 30 < th dose dependent rect. 22 1
835 202.00 humidity 80.0 30 > th dose independent rect. 22 1
837 202.01 humidity 90.0 30 < th dose independent rect. 22 1
847 202.05 humidity 90.0 30 > th dose dependent rect. 7 1
848 202.05 humidity 90.0 30 > th dose dependent rect. 7 3
857 202.09 atmosphere 1005.0 30 > th dose independent rect. 22 1
869 202.13 wind 1.0 30 > th dose independent rect. 22 1
874 202.14 temperature 10.0 30 > th dose independent rect. 22 1
876 202.14 temperature 30.0 30 < th dose independent rect. 22 1
877 202.14 humidity 50.0 30 > th dose independent rect. 22 1
880 202.14 atmosphere 995.0 30 > th dose independent rect. 22 1
881 202.14 atmosphere 1010.0 30 < th dose independent rect. 22 1
883 202.14 radiation 1.0 30 < th dose independent rect. 22 1
888 202.14 precipitation 0.1 30 < th dose independent rect. 22 1
890 202.14 temperature 10.0 30 > th dose independent rect. 23 23
891 202.14 radiation 1.0 30 < th dose dependent rect. 22 1
896 202.14 precipitation 0.1 30 < th dose dependent rect. 22 1
900 202.16 humidity 50.0 30 > th dose dependent rect. 22 1
925 202.29 wind 1.0 10 < th dose independent rect. 15 11
947 202.36 humidity 70.0 4320 > th dose independent rect. 22 4
953 202.38 atmosphere 1015.0 30 < th dose dependent rect. 22 1
959 202.41 wind 1.0 10 < th dose independent rect. 11 15
965 202.43 humidity 90.0 30 < th dose dependent rect. 22 1
967 202.44 radiation 40.0 90 > th dose dependent rect. 14 1