Os07g0142500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0142500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.95 | 0.542 | 3.03 | 0.155 | 0.122 | 1.16 | -0.942 | 4.03 | 0.36 | 5.53 | 46.99 | 685 | -- | -- |
| 132.57 | 0.536 | 3.05 | 0.102 | 0.16 | 2.49 | -0.86 | -- | 0.334 | 6.58 | 45.27 | 614 | -- | -- |
| 133.81 | 0.539 | 3.03 | 0.151 | 0.13 | 1.15 | -- | 3.87 | 0.365 | 6.36 | 44.98 | 608 | -- | -- |
| 133.83 | 0.539 | 3.05 | 0.0996 | 0.136 | 2.75 | -- | -- | 0.367 | 6.76 | 45.39 | 620 | -- | -- |
| 134.75 | 0.541 | 3.03 | 0.144 | -- | 1.21 | -- | 3.84 | 0.366 | -- | 45.15 | 615 | -- | -- |
| 154.03 | 0.582 | 3.05 | 0.321 | 0.0792 | -- | -1.27 | -- | 0.345 | 6.4 | -- | -- | -- | -- |
| 157.97 | 0.589 | 3.05 | 0.303 | 0.0817 | -- | -- | -- | 0.349 | 4.77 | -- | -- | -- | -- |
| 134.78 | 0.541 | 3.05 | 0.108 | -- | 2.73 | -- | -- | 0.37 | -- | 45.32 | 620 | -- | -- |
| 134.08 | 0.539 | 3.05 | -- | 0.14 | 2.79 | -- | -- | 0.359 | 6.7 | 45.42 | 620 | -- | -- |
| 158.32 | 0.588 | 3.05 | 0.306 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 160.39 | 0.592 | 3.06 | -- | 0.0873 | -- | -- | -- | 0.315 | 4.67 | -- | -- | -- | -- |
| 135.07 | 0.541 | 3.05 | -- | -- | 2.78 | -- | -- | 0.358 | -- | 45.35 | 620 | -- | -- |
| 160.8 | 0.592 | 3.06 | -- | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.52 | humidity | 50 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 21 | 134.03 | humidity | 50 | 720 | < th | dose dependent | sin | 5 | NA |
| 113 | 135.17 | humidity | 50 | 720 | < th | dose dependent | no | NA | NA |
| 360 | 137.28 | humidity | 50 | 720 | < th | dose independent | rect. | 11 | 4 |
| 383 | 137.47 | humidity | 50 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 402 | 137.55 | humidity | 50 | 720 | > th | dose independent | rect. | 8 | 7 |
| 404 | 137.57 | humidity | 50 | 720 | < th | dose independent | rect. | 13 | 2 |
| 473 | 138.48 | humidity | 50 | 720 | > th | dose independent | rect. | 23 | 15 |
| 494 | 138.76 | atmosphere | 1010 | 10 | > th | dose dependent | no | NA | NA |
| 495 | 138.76 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 23 | 14 |
| 496 | 138.76 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 595 | 138.77 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 609 | 138.87 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 610 | 138.87 | atmosphere | 1010 | 10 | > th | dose dependent | sin | 6 | NA |
| 611 | 138.88 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 706 | 138.90 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 22 | 7 |
| 720 | 138.90 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 729 | 138.91 | atmosphere | 1010 | 10 | > th | dose dependent | sin | 18 | NA |
| 730 | 138.93 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 731 | 138.93 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 732 | 138.93 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 757 | 139.01 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 16 | 17 |
| 758 | 139.01 | humidity | 50 | 720 | > th | dose independent | rect. | 15 | 23 |
| 791 | 139.10 | humidity | 50 | 720 | > th | dose independent | rect. | 2 | 18 |
| 793 | 139.14 | humidity | 50 | 720 | < th | dose independent | sin | 5 | NA |
| 823 | 139.27 | atmosphere | 1015 | 90 | < th | dose independent | rect. | 21 | 23 |
| 825 | 139.29 | humidity | 50 | 720 | > th | dose independent | rect. | 7 | 14 |
| 830 | 139.33 | humidity | 50 | 720 | > th | dose independent | rect. | 9 | 10 |
| 847 | 139.37 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 982 | 139.47 | humidity | 50 | 720 | > th | dose independent | rect. | 7 | 22 |