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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0142300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0375) R2 : 0.172
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.89 (0.331) R2dE : 0.139 R2E : 0.114
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.392 (0.0792) R2dN8 : 0.0579 R2N8 : 0.0327
σ : 0.705
deviance : 228.87
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 45.57
memory length : 608
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.78 0.704 3.23 0.285 0.196 0.767 0.44 5.71 0.415 13.4 46.12 629 -- --
224.97 0.699 3.26 0.197 0.194 2.9 0.636 -- 0.414 14.8 45.32 608 -- --
225.02 0.699 3.24 0.27 0.197 1.45 -- 3.54 0.416 11.9 46.13 620 -- --
224.99 0.699 3.26 0.235 0.2 2.88 -- -- 0.421 12 45.47 608 -- --
227.56 0.703 3.24 0.281 -- 1.15 -- 4.11 0.414 -- 46.16 620 -- --
256.01 0.75 3.27 0.494 0.0682 -- 1.41 -- 0.389 18.1 -- -- -- --
259.52 0.754 3.26 0.485 0.165 -- -- -- 0.396 13.9 -- -- -- --
227.55 0.703 3.26 0.229 -- 2.79 -- -- 0.415 -- 45.54 608 -- --
226.35 0.701 3.25 -- 0.194 3 -- -- 0.414 12 45.5 608 -- --
261.18 0.755 3.27 0.478 -- -- -- -- 0.392 -- -- -- -- --
265.73 0.763 3.28 -- 0.156 -- -- -- 0.342 13.8 -- -- -- --
228.87 0.705 3.27 -- -- 2.89 -- -- 0.392 -- 45.57 608 -- --
267.21 0.763 3.28 -- -- -- -- -- 0.339 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.75 humidity 50 720 < th dose dependent rect. 11 5
19 227.85 humidity 50 720 < th dose dependent rect. 13 2
40 228.26 humidity 50 720 < th dose dependent sin 4 NA
107 229.12 humidity 50 720 < th dose dependent no NA NA
290 229.87 humidity 50 720 < th dose independent rect. 11 4
292 230.00 humidity 50 720 < th dose independent rect. 13 2
293 230.03 wind 3 10 < th dose independent rect. 12 2
314 230.33 humidity 50 720 > th dose independent rect. 7 8
316 230.43 atmosphere 1005 90 < th dose dependent rect. 12 1
317 230.50 wind 5 10 < th dose dependent rect. 12 2
319 230.69 humidity 50 720 > th dose independent rect. 23 15
378 232.10 atmosphere 1005 10 < th dose dependent rect. 14 1
381 232.12 humidity 50 720 > th dose independent rect. 7 22
397 232.59 atmosphere 1015 1440 < th dose independent rect. 22 1
398 232.64 humidity 50 720 > th dose independent sin 3 NA
401 232.79 wind 1 14400 < th dose dependent rect. 7 2
424 232.93 wind 1 14400 > th dose independent rect. 7 1
428 232.99 wind 1 14400 < th dose independent rect. 7 1
465 233.01 wind 1 14400 < th dose dependent rect. 6 6
490 233.14 humidity 50 720 < th dose independent sin 4 NA
493 233.16 wind 7 14400 < th dose independent rect. 9 1
496 233.20 humidity 50 720 > th dose independent rect. 15 23
499 233.23 atmosphere 1010 720 > th dose dependent rect. 2 20
502 233.26 atmosphere 1010 720 < th dose independent rect. 7 21
503 233.29 atmosphere 1015 4320 > th dose independent rect. 23 1
521 233.45 radiation 10 4320 < th dose dependent rect. 11 1
533 233.62 humidity 50 720 > th dose independent rect. 9 18
536 233.64 humidity 50 720 > th dose independent rect. 11 17
553 233.78 atmosphere 1010 720 < th dose independent rect. 16 19
606 234.10 atmosphere 1010 720 > th dose dependent rect. 16 20
610 234.11 atmosphere 1010 720 < th dose independent rect. 14 21
616 234.16 wind 1 14400 < th dose independent rect. 6 6
621 234.20 humidity 50 4320 > th dose independent rect. 16 22
627 234.23 atmosphere 1010 720 < th dose independent rect. 7 13
634 234.27 atmosphere 1010 720 < th dose independent rect. 8 11
635 234.27 humidity 50 720 > th dose independent rect. 7 14
644 234.32 humidity 50 4320 < th dose independent rect. 16 22
648 234.33 humidity 50 720 > th dose independent rect. 9 10
667 234.42 wind 1 14400 > th dose independent rect. 5 7
669 234.42 atmosphere 1010 720 > th dose dependent rect. 19 23
706 234.51 atmosphere 1010 720 > th dose dependent no NA NA
771 234.65 atmosphere 1015 4320 > th dose dependent rect. 23 1
775 234.66 atmosphere 1010 720 > th dose dependent sin 0 NA
782 234.70 humidity 50 720 > th dose independent rect. 23 20
783 234.71 humidity 50 4320 > th dose independent rect. 2 15
785 234.71 humidity 50 720 > th dose independent rect. 22 23
801 234.75 atmosphere 1010 720 > th dose dependent rect. 7 23
802 234.76 humidity 50 4320 > th dose independent rect. 5 12
804 234.77 humidity 50 4320 > th dose independent rect. 8 9
813 234.80 humidity 50 4320 > th dose independent rect. 18 23
817 234.81 humidity 50 720 > th dose independent rect. 7 12
825 234.83 atmosphere 1010 720 > th dose dependent rect. 10 23
832 234.85 atmosphere 1010 720 < th dose independent rect. 11 23
833 234.85 humidity 70 14400 < th dose dependent rect. 7 1
842 234.90 atmosphere 1015 1440 < th dose independent rect. 21 10
844 234.90 atmosphere 1010 720 < th dose independent rect. 3 23
853 234.94 atmosphere 1015 1440 < th dose independent rect. 21 13
873 234.97 humidity 50 720 < th dose independent no NA NA