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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0142100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.34 (0.101) R2 : 0.261
β1 : -0.553 (0.302) R2dD : 0.00797 R2D : -0.161
β2 : -- (--) R2dC : -- R2C : --
β3 : 24.2 (3.12) R2dE : 3.66 R2E : -2.61
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 58.8 (8.56) R2dD*E : 2.86 R2D*E : -3.66
γ1 : -0.923 (0.153) R2dN8 : 0.0809 R2N8 : -0.0546
σ : 1.32
deviance : 802.59
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.9372
memory length : 736
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.2
open length of G : 5.68

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
795.85 1.33 4.34 -0.518 0.234 24.1 -1.5 57.7 -0.917 6.19 0.968 734 8.99 5.92
927.55 1.43 3.88 -1.89 0.162 3.03 -0.582 -- -0.967 3.67 0.968 734 8.99 5.92
800.93 1.32 4.34 -0.548 0.229 24.1 -- 58.2 -0.922 5.25 0.9858 736 8.98 5.9
866.77 1.37 3.89 -1.56 0.214 3.91 -- -- -0.871 3.93 0.1216 652 9.88 5.45
802.59 1.32 4.34 -0.553 -- 24.2 -- 58.8 -0.923 -- 0.9372 736 9.2 5.68
938.68 1.44 3.88 -1.95 0.126 -- -0.441 -- -0.984 4.12 -- -- -- --
939.11 1.44 3.88 -1.94 0.128 -- -- -- -0.982 2.74 -- -- -- --
868.18 1.37 3.87 -1.5 -- 3.88 -- -- -0.847 -- 2.598e-06 652 9.98 5.37
853.01 1.36 3.82 -- 0.243 4.34 -- -- -0.696 4.44 0.009516 1806 11 6.7
940.06 1.43 3.88 -1.94 -- -- -- -- -0.979 -- -- -- -- --
1038.8 1.51 3.83 -- 0.0902 -- -- -- -0.765 2.52 -- -- -- --
850.83 1.36 3.82 -- -- 4.27 -- -- -0.547 -- 4.698e-06 1795 11 6.67
1039.27 1.5 3.83 -- -- -- -- -- -0.763 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 780.58 humidity 50 14400 < th dose dependent rect. 17 18
2 782.25 humidity 50 14400 < th dose dependent rect. 9 1
3 782.57 humidity 70 14400 < th dose dependent rect. 21 1
12 783.64 humidity 90 14400 < th dose dependent rect. 20 12
13 783.90 humidity 80 14400 > th dose independent rect. 18 14
17 786.62 humidity 80 14400 > th dose independent sin 10 NA
36 787.39 humidity 60 14400 < th dose independent rect. 6 1
38 787.39 humidity 60 14400 < th dose independent rect. 20 1
40 787.39 radiation 20 14400 > th dose independent rect. 17 1
91 787.39 humidity 60 14400 < th dose dependent rect. 6 1
95 787.39 radiation 20 14400 > th dose dependent rect. 17 1
149 788.41 humidity 80 14400 > th dose independent rect. 20 15
150 788.45 humidity 90 14400 < th dose dependent rect. 20 8
152 788.75 humidity 80 14400 > th dose independent rect. 18 9
157 789.19 humidity 80 14400 < th dose independent rect. 18 14
161 789.86 humidity 90 14400 < th dose dependent rect. 20 2
179 792.39 humidity 80 14400 < th dose independent sin 11 NA
190 793.52 humidity 60 14400 > th dose independent rect. 7 1
194 793.65 humidity 80 14400 < th dose independent rect. 18 11
220 795.95 humidity 60 14400 > th dose dependent rect. 20 2
229 796.79 radiation 1 720 < th dose independent rect. 9 6
230 796.79 radiation 1 720 < th dose dependent rect. 9 6
236 797.15 radiation 1 1440 > th dose independent rect. 9 5
242 797.67 humidity 60 14400 > th dose independent rect. 20 12
245 797.77 humidity 60 14400 > th dose dependent rect. 20 13
248 798.02 radiation 1 1440 < th dose independent rect. 10 2
250 798.02 radiation 1 1440 < th dose dependent rect. 10 2
251 798.12 humidity 60 14400 > th dose independent rect. 1 7
270 798.93 radiation 1 1440 < th dose independent rect. 13 1
272 798.93 radiation 1 1440 < th dose dependent rect. 13 1
280 799.22 radiation 1 1440 > th dose independent rect. 13 1
283 799.25 humidity 50 14400 > th dose dependent rect. 3 5
290 799.65 humidity 50 14400 < th dose independent rect. 9 1
293 799.76 humidity 60 14400 > th dose dependent rect. 1 8
369 802.53 radiation 1 720 < th dose independent rect. 12 3
370 802.53 radiation 1 720 < th dose dependent rect. 12 3
381 802.85 humidity 90 14400 < th dose dependent rect. 4 4
384 803.00 humidity 90 14400 < th dose dependent rect. 6 2
422 804.21 humidity 50 14400 > th dose dependent rect. 6 2
462 805.20 humidity 90 14400 < th dose dependent sin 10 NA
473 805.48 humidity 50 14400 > th dose dependent rect. 19 10
535 807.25 humidity 90 720 > th dose independent rect. 12 1
537 807.25 humidity 90 720 > th dose dependent rect. 12 1
548 807.49 radiation 1 1440 > th dose independent rect. 4 1
558 807.49 radiation 1 1440 > th dose dependent rect. 4 1
608 808.33 humidity 60 14400 > th dose dependent sin 9 NA
624 808.89 humidity 80 4320 > th dose dependent rect. 8 3
666 810.15 wind 9 4320 > th dose dependent rect. 18 1
828 815.26 temperature 15 14400 > th dose independent rect. 11 2
836 815.42 temperature 15 14400 < th dose independent rect. 11 2
838 815.48 atmosphere 995 43200 < th dose dependent rect. 14 20
864 816.32 humidity 80 14400 > th dose independent rect. 23 4
865 816.35 humidity 70 14400 > th dose independent rect. 21 1
866 816.40 atmosphere 995 43200 > th dose independent rect. 23 18
880 816.72 temperature 15 14400 < th dose dependent rect. 22 1
892 817.02 atmosphere 995 43200 > th dose independent rect. 23 22
908 817.38 humidity 90 4320 < th dose independent rect. 6 6
910 817.44 atmosphere 995 43200 < th dose dependent rect. 24 10
911 817.46 atmosphere 995 43200 < th dose independent rect. 23 17
912 817.48 atmosphere 1005 10 < th dose independent rect. 16 8
914 817.49 atmosphere 995 43200 < th dose independent rect. 3 7
916 817.49 atmosphere 995 43200 < th dose independent rect. 23 23
920 817.54 atmosphere 995 43200 < th dose dependent rect. 2 7
921 817.55 atmosphere 995 43200 < th dose independent rect. 4 5
923 817.55 temperature 15 14400 < th dose dependent rect. 21 3
947 817.65 atmosphere 995 43200 > th dose independent rect. 4 6
964 817.73 atmosphere 995 43200 < th dose independent rect. 22 20
968 817.80 humidity 80 14400 < th dose dependent rect. 2 1
975 817.86 atmosphere 995 43200 < th dose independent rect. 5 3
982 817.96 atmosphere 995 43200 > th dose independent rect. 7 22
997 818.06 atmosphere 995 43200 < th dose independent rect. 7 22