Os07g0141700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os07g0141700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 368.81 | 0.902 | 3.28 | 0.394 | 0.223 | 1.16 | 0.623 | -1.93 | -0.185 | 5.46 | 51 | 1247 | -- | -- |
| 368.94 | 0.895 | 3.3 | 0.29 | 0.235 | 0.634 | 0.55 | -- | -0.169 | 5.05 | 53.76 | 1242 | -- | -- |
| 369.63 | 0.895 | 3.28 | 0.398 | 0.229 | 1.18 | -- | -1.99 | -0.189 | 4.65 | 51.25 | 1241 | -- | -- |
| 369.79 | 0.896 | 3.3 | 0.286 | 0.229 | 0.645 | -- | -- | -0.19 | 4.81 | 53 | 1250 | -- | -- |
| 372.41 | 0.899 | 3.28 | 0.391 | -- | 1.11 | -- | -1.89 | -0.178 | -- | 51.35 | 1247 | -- | -- |
| 378.46 | 0.912 | 3.28 | 0.142 | 0.187 | -- | 0.643 | -- | -0.0951 | 6.46 | -- | -- | -- | -- |
| 379.46 | 0.912 | 3.28 | 0.15 | 0.191 | -- | -- | -- | -0.0975 | 5.99 | -- | -- | -- | -- |
| 372.55 | 0.899 | 3.31 | 0.264 | -- | 0.609 | -- | -- | -0.187 | -- | 53 | 1250 | -- | -- |
| 371.69 | 0.898 | 3.31 | -- | 0.231 | 0.569 | -- | -- | -0.216 | 4.84 | 54.15 | 1250 | -- | -- |
| 381.36 | 0.913 | 3.29 | 0.155 | -- | -- | -- | -- | -0.0931 | -- | -- | -- | -- | -- |
| 380.05 | 0.912 | 3.29 | -- | 0.194 | -- | -- | -- | -0.114 | 5.95 | -- | -- | -- | -- |
| 374.46 | 0.901 | 3.31 | -- | -- | 0.53 | -- | -- | -0.204 | -- | 54.44 | 1250 | -- | -- |
| 381.99 | 0.912 | 3.29 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 362.49 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 5 |
| 3 | 362.87 | humidity | 80 | 10 | > th | dose independent | rect. | 9 | 5 |
| 4 | 362.99 | humidity | 90 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 6 | 363.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 12 | 363.50 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 13 | 363.54 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 14 | 363.61 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 1 |
| 15 | 363.62 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 25 | 363.78 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 30 | 363.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 31 | 363.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 32 | 363.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 33 | 363.83 | humidity | 90 | 270 | > th | dose dependent | rect. | 17 | 3 |
| 61 | 364.30 | humidity | 80 | 10 | > th | dose independent | rect. | 10 | 1 |
| 64 | 364.39 | humidity | 80 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 86 | 364.54 | humidity | 90 | 90 | > th | dose independent | rect. | 18 | 1 |
| 87 | 364.54 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 19 |
| 90 | 364.57 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 99 | 364.68 | humidity | 90 | 270 | > th | dose independent | rect. | 16 | 5 |
| 114 | 364.73 | humidity | 90 | 270 | > th | dose dependent | rect. | 19 | 1 |
| 124 | 364.94 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 5 | 2 |
| 129 | 365.01 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 1 |
| 130 | 365.01 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 147 | 365.30 | humidity | 90 | 270 | > th | dose dependent | sin | 20 | NA |
| 171 | 365.41 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 179 | 365.46 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 1 |
| 186 | 365.47 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 211 | 365.59 | wind | 3 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 220 | 365.63 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 4 | 4 |
| 228 | 365.67 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 248 | 365.79 | humidity | 90 | 270 | < th | dose independent | rect. | 10 | 12 |
| 249 | 365.79 | humidity | 80 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 332 | 366.25 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 3 |
| 357 | 366.31 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 361 | 366.33 | humidity | 80 | 720 | < th | dose dependent | sin | 15 | NA |
| 390 | 366.50 | humidity | 90 | 270 | > th | dose independent | sin | 20 | NA |
| 412 | 366.58 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 1 |
| 466 | 366.79 | humidity | 90 | 30 | < th | dose independent | rect. | 12 | 19 |
| 486 | 366.89 | humidity | 70 | 720 | < th | dose independent | sin | 14 | NA |
| 562 | 367.15 | humidity | 90 | 270 | < th | dose independent | sin | 20 | NA |
| 621 | 367.32 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 737 | 367.59 | wind | 3 | 10 | > th | dose independent | rect. | 12 | 18 |
| 761 | 367.66 | wind | 3 | 10 | > th | dose independent | rect. | 12 | 15 |
| 769 | 367.69 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 782 | 367.73 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 829 | 367.88 | humidity | 60 | 1440 | < th | dose dependent | sin | 10 | NA |
| 851 | 367.90 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 879 | 367.93 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 931 | 368.00 | wind | 5 | 30 | < th | dose dependent | rect. | 7 | 20 |
| 997 | 368.15 | wind | 1 | 10 | > th | dose dependent | rect. | 12 | 19 |