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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0141200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.0543) R2 : 0.535
β1 : 1.91 (0.199) R2dD : 0.0976 R2D : 0.0961
β2 : 2.49 (0.157) R2dC : 0.318 R2C : -0.0166
β3 : -2.79 (0.148) R2dE : 0.451 R2E : 0.0969
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.367 (0.116) R2dN8 : 0.0136 R2N8 : 0.0135
σ : 1.01
deviance : 474.83
__
_____
C
peak time of C : 6.85
E
wheather : radiation
threshold : 12.26
memory length : 26
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.646
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.69 1.02 4.85 1.91 2.44 -2.74 -1.15 -0.829 -0.373 6.84 12.15 27 0.767 --
469.11 1.01 4.85 1.91 2.55 -2.96 -1.57 -- -0.379 6.44 13.13 26 1.05 --
470.68 1.01 4.85 1.88 2.47 -2.71 -- -1.11 -0.37 7.01 11.99 26 0.506 --
474.83 1.01 4.84 1.91 2.49 -2.79 -- -- -0.367 6.85 12.26 26 0.646 --
562.63 1.11 4.88 1.85 -- -2.2 -- -0.274 -0.266 -- 15.28 2 6.15 --
561.16 1.11 4.82 1.87 2.39 -- 0.0541 -- -0.23 11.1 -- -- -- --
561.18 1.11 4.82 1.87 2.39 -- -- -- -0.23 11.1 -- -- -- --
562.99 1.11 4.88 1.85 -- -2.2 -- -- -0.266 -- 15.28 2 6.15 --
569.73 1.11 4.89 -- 2.48 -2.75 -- -- -0.509 6.71 13.13 20 0.932 --
917.94 1.42 4.88 1.81 -- -- -- -- -0.249 -- -- -- -- --
653.2 1.2 4.87 -- 2.38 -- -- -- -0.438 11 -- -- -- --
653.67 1.19 4.93 -- -- -2.19 -- -- -0.471 -- 15.28 2 6.15 --
1004.71 1.48 4.93 -- -- -- -- -- -0.45 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 470.57 radiation 10.0 30 < th dose dependent sin 6 NA
16 481.68 radiation 1.0 90 < th dose independent sin 7 NA
17 481.74 radiation 1.0 10 > th dose independent sin 4 NA
30 486.10 radiation 1.0 90 > th dose independent sin 6 NA
37 487.17 radiation 10.0 10 < th dose dependent rect. 24 17
46 489.57 radiation 10.0 10 < th dose dependent rect. 24 14
52 490.33 radiation 1.0 10 < th dose independent sin 4 NA
56 490.74 radiation 1.0 10 > th dose independent rect. 5 8
67 490.77 radiation 10.0 10 < th dose dependent rect. 24 12
92 493.75 humidity 90.0 270 < th dose independent rect. 9 8
97 494.06 radiation 10.0 10 < th dose dependent rect. 24 6
98 494.15 precipitation 0.1 90 < th dose independent rect. 13 16
99 494.15 precipitation 0.1 90 < th dose dependent rect. 13 16
105 494.93 temperature 15.0 270 > th dose independent rect. 24 15
108 495.71 temperature 15.0 270 > th dose independent rect. 8 9
122 496.44 precipitation 0.1 270 < th dose independent rect. 11 16
123 496.44 precipitation 0.1 270 < th dose dependent rect. 11 16
124 496.48 atmosphere 1010.0 270 < th dose independent rect. 22 6
134 496.78 radiation 1.0 90 < th dose independent rect. 24 14
137 496.94 radiation 10.0 10 < th dose dependent rect. 24 8
143 497.29 temperature 15.0 1440 > th dose independent rect. 7 18
161 498.16 radiation 1.0 90 < th dose independent rect. 24 7
163 498.26 wind 9.0 270 < th dose independent rect. 11 16
171 498.38 atmosphere 1010.0 90 < th dose independent rect. 11 18
181 498.61 humidity 50.0 10 > th dose independent rect. 13 16
187 498.86 radiation 1.0 90 < th dose independent rect. 24 10
189 498.90 atmosphere 995.0 90 > th dose independent rect. 13 16
192 498.95 temperature 15.0 1440 > th dose independent rect. 7 16
214 499.51 radiation 1.0 10 < th dose independent rect. 24 16
221 499.85 temperature 15.0 90 > th dose independent rect. 11 18
222 499.86 wind 9.0 90 < th dose independent rect. 13 16
239 499.92 precipitation 0.1 270 < th dose independent rect. 3 8
240 499.92 radiation 1.0 10 < th dose independent rect. 24 14
242 499.92 precipitation 0.1 270 < th dose dependent rect. 3 8
243 499.94 wind 1.0 90 > th dose independent rect. 13 16
248 500.12 temperature 10.0 270 > th dose independent rect. 3 8
249 500.12 atmosphere 995.0 270 > th dose independent rect. 3 8
250 500.12 atmosphere 1015.0 270 < th dose independent rect. 3 8
252 500.12 temperature 10.0 270 > th dose independent rect. 11 16
253 500.13 wind 5.0 270 < th dose independent rect. 22 6
254 500.19 precipitation 0.1 90 < th dose independent rect. 5 8
255 500.19 precipitation 0.1 90 < th dose dependent rect. 5 8
259 500.25 radiation 10.0 10 < th dose dependent rect. 22 19
260 500.26 humidity 50.0 270 > th dose independent rect. 3 8
264 500.37 temperature 10.0 90 > th dose independent rect. 5 8
265 500.37 atmosphere 995.0 90 > th dose independent rect. 5 8
266 500.37 atmosphere 1015.0 90 < th dose independent rect. 5 8
267 500.37 temperature 10.0 90 > th dose independent rect. 13 16
289 500.57 precipitation 0.1 270 < th dose independent rect. 22 6
290 500.57 precipitation 0.1 270 < th dose dependent rect. 22 6
303 500.65 temperature 15.0 270 > th dose independent rect. 22 6
312 500.73 temperature 30.0 10 < th dose independent rect. 12 17
315 500.75 wind 9.0 270 < th dose dependent rect. 22 6
322 500.93 humidity 50.0 10 > th dose independent rect. 5 8
326 501.01 radiation 10.0 10 < th dose dependent rect. 3 14
328 501.09 atmosphere 995.0 30 > th dose dependent rect. 5 8
333 501.12 temperature 30.0 270 < th dose independent rect. 22 6
334 501.12 humidity 50.0 270 > th dose independent rect. 22 6
337 501.12 atmosphere 995.0 270 > th dose independent rect. 22 6
343 501.12 temperature 10.0 270 > th dose independent rect. 4 18
349 501.17 wind 9.0 270 < th dose independent rect. 3 8
354 501.22 radiation 40.0 90 < th dose independent rect. 13 16
374 501.64 radiation 1.0 10 < th dose independent rect. 24 7
393 501.83 radiation 1.0 10 < th dose independent rect. 24 12
414 502.38 wind 5.0 90 < th dose independent rect. 24 5
424 502.44 temperature 15.0 270 > th dose independent rect. 9 19
437 502.70 wind 1.0 90 > th dose independent rect. 24 6
465 503.21 wind 5.0 270 < th dose independent rect. 24 2
473 503.36 wind 9.0 270 < th dose independent rect. 4 18
495 503.63 atmosphere 995.0 270 > th dose independent rect. 24 15
499 503.66 temperature 15.0 1440 > th dose independent rect. 7 14
507 503.86 wind 1.0 90 > th dose independent rect. 3 2
514 504.07 wind 9.0 90 < th dose independent rect. 5 8
516 504.07 radiation 1.0 270 < th dose dependent rect. 21 9
524 504.25 wind 9.0 270 < th dose dependent rect. 23 4
552 504.39 atmosphere 1015.0 270 < th dose independent rect. 4 18
560 504.49 atmosphere 1010.0 30 < th dose independent rect. 13 16
593 504.69 radiation 10.0 10 < th dose dependent rect. 3 11
618 504.83 wind 1.0 90 > th dose independent rect. 11 18
625 504.98 radiation 40.0 270 < th dose independent rect. 15 9
628 505.05 radiation 1.0 10 < th dose independent rect. 3 13
632 505.17 wind 9.0 270 < th dose independent rect. 24 15
633 505.18 atmosphere 1010.0 10 < th dose independent rect. 22 8
651 505.42 temperature 30.0 90 < th dose independent rect. 5 6
657 505.48 wind 5.0 30 < th dose dependent rect. 24 5
666 505.58 temperature 10.0 270 > th dose independent rect. 15 9
668 505.58 precipitation 0.1 270 < th dose independent rect. 4 18
669 505.58 precipitation 0.1 270 < th dose dependent rect. 4 18
670 505.59 atmosphere 1015.0 270 < th dose independent rect. 24 15
674 505.65 precipitation 0.1 10 < th dose independent rect. 24 6
675 505.65 precipitation 0.1 10 < th dose dependent rect. 24 6
676 505.67 radiation 1.0 10 < th dose independent rect. 3 11
707 505.97 atmosphere 995.0 90 > th dose independent rect. 11 18
751 506.28 atmosphere 1010.0 10 < th dose independent rect. 24 6
759 506.37 atmosphere 995.0 90 > th dose dependent rect. 5 6
772 506.46 wind 9.0 270 < th dose dependent rect. 24 2
790 506.64 radiation 10.0 10 < th dose dependent rect. 20 21
792 506.68 radiation 10.0 30 < th dose dependent rect. 3 9
797 506.72 temperature 10.0 270 > th dose dependent rect. 22 6
803 506.81 atmosphere 995.0 270 > th dose independent rect. 4 18
826 506.94 wind 9.0 270 < th dose independent rect. 15 9
834 507.01 radiation 10.0 10 < th dose dependent rect. 3 3
851 507.05 temperature 15.0 10 > th dose independent rect. 24 6
868 507.12 wind 9.0 10 < th dose independent rect. 24 6
870 507.12 temperature 30.0 10 < th dose independent rect. 24 6
871 507.12 humidity 50.0 10 > th dose independent rect. 24 6
874 507.12 atmosphere 995.0 10 > th dose independent rect. 24 6
879 507.12 temperature 10.0 10 > th dose independent rect. 6 18
888 507.24 temperature 30.0 90 < th dose independent rect. 5 8
892 507.30 radiation 30.0 1440 < th dose independent rect. 1 6
934 507.72 radiation 1.0 10 < th dose independent rect. 3 4
936 507.73 temperature 15.0 1440 > th dose independent rect. 7 8
949 507.83 wind 1.0 270 > th dose independent rect. 15 9
956 507.87 wind 9.0 10 < th dose independent rect. 6 18
969 507.94 radiation 1.0 10 < th dose independent rect. 3 9
980 508.05 temperature 30.0 270 < th dose independent rect. 3 8
981 508.06 precipitation 0.1 270 < th dose independent rect. 24 15
982 508.06 precipitation 0.1 270 < th dose dependent rect. 24 15
990 508.14 radiation 10.0 10 < th dose dependent rect. 22 8