Os07g0141100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0141100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.47 | 0.719 | 4.76 | 4.05 | 2.42 | -1.38 | 1.25 | 2.07 | 1.04 | 23.2 | 19.14 | 673 | 5.03 | 1.22 |
| 238.4 | 0.719 | 4.8 | 3.69 | 2.36 | -1.41 | 0.884 | -- | 0.951 | 23.1 | 19.07 | 645 | 5.02 | 1.9 |
| 240.75 | 0.723 | 4.77 | 3.98 | 2.44 | -1.37 | -- | 1.68 | 1.04 | 23.2 | 19.29 | 664 | 5.08 | 1.32 |
| 240.59 | 0.722 | 4.78 | 3.68 | 2.28 | -1.49 | -- | -- | 0.994 | 23.1 | 18.45 | 650 | 5.02 | 1.82 |
| 250.1 | 0.737 | 4.72 | 3.86 | -- | -3.42 | -- | -0.367 | 0.998 | -- | 5.192 | 690 | 3.25 | 4.5 |
| 293.43 | 0.803 | 4.88 | 3.55 | 3.24 | -- | 1.04 | -- | 0.665 | 23.1 | -- | -- | -- | -- |
| 298.03 | 0.808 | 4.88 | 3.5 | 3.23 | -- | -- | -- | 0.661 | 23.1 | -- | -- | -- | -- |
| 250.65 | 0.737 | 4.73 | 3.84 | -- | -3.37 | -- | -- | 0.969 | -- | 4.402 | 689 | 3.22 | 4.5 |
| 591.1 | 1.13 | 4.9 | -- | 2.49 | -1.11 | -- | -- | 0.49 | 23.2 | 17.32 | 640 | 5.18 | 1.72 |
| 950.83 | 1.44 | 4.8 | 3.58 | -- | -- | -- | -- | 0.689 | -- | -- | -- | -- | -- |
| 621.55 | 1.17 | 4.97 | -- | 3.27 | -- | -- | -- | 0.271 | 23.2 | -- | -- | -- | -- |
| 596.2 | 1.14 | 4.87 | -- | -- | -2.95 | -- | -- | 0.427 | -- | -36.55 | 699 | 3.58 | 3.75 |
| 1288.94 | 1.68 | 4.89 | -- | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 242.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 11 |
| 5 | 243.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 13 | 244.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 43 | 249.36 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 60 | 250.81 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 8 |
| 68 | 251.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 70 | 252.16 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 10 |
| 93 | 253.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 113 | 254.73 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 141 | 255.30 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 3 |
| 188 | 256.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 200 | 256.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 216 | 257.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 229 | 257.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 241 | 258.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 256 | 258.53 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 274 | 258.84 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 1 |
| 278 | 258.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 6 |
| 350 | 260.22 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 365 | 260.47 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 405 | 261.17 | radiation | 10 | 10 | < th | dose dependent | rect. | 14 | 23 |
| 411 | 261.21 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 417 | 261.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 6 |
| 424 | 261.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 428 | 261.66 | radiation | 10 | 720 | < th | dose independent | rect. | 5 | 1 |
| 446 | 261.93 | temperature | 25 | 10 | > th | dose dependent | sin | 1 | NA |
| 462 | 262.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 3 |
| 471 | 262.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 6 |
| 502 | 262.37 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 1 |
| 561 | 262.80 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 600 | 263.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 2 |
| 641 | 263.54 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 11 |
| 643 | 263.57 | radiation | 1 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 651 | 263.68 | radiation | 10 | 10 | < th | dose dependent | no | NA | NA |
| 663 | 263.80 | radiation | 10 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 664 | 263.80 | radiation | 10 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 676 | 263.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 686 | 263.98 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 763 | 264.52 | radiation | 10 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 810 | 264.89 | radiation | 10 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 843 | 265.14 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 12 |
| 861 | 265.21 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 876 | 265.32 | radiation | 10 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 883 | 265.38 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 913 | 265.59 | humidity | 50 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 945 | 265.80 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 964 | 265.86 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 7 | 3 |