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Os07g0139500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0126) R2 : 0.663
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.859 (0.0301) R2dC : 0.603 R2C : 0.577
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.251 (0.0265) R2dN8 : 0.086 R2N8 : 0.0591
σ : 0.237
deviance : 25.75
__
_____
C
peak time of C : 12.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.23 0.216 9.14 -0.335 0.86 0.116 -0.419 0.55 0.239 13 0.4068 5370 -- --
21.06 0.214 9.15 -0.412 0.852 0.258 -0.442 -- 0.242 13 0.6324 20599 -- --
21.96 0.218 9.14 -0.34 0.86 0.105 -- 0.575 0.235 13 0.4267 5368 -- --
21.88 0.218 9.15 -0.429 0.854 0.267 -- -- 0.245 12.9 0.5027 20638 -- --
66.97 0.381 9.14 -0.335 -- -0.00664 -- 1.02 0.217 -- 0.5058 17217 -- --
22.59 0.223 9.15 -0.278 0.854 -- -0.455 -- 0.221 13 -- -- -- --
23.46 0.227 9.16 -0.295 0.854 -- -- -- 0.218 12.9 -- -- -- --
67.06 0.381 9.16 -0.459 -- 0.285 -- -- 0.24 -- 0.468 20522 -- --
25.54 0.235 9.15 -- 0.86 0.0798 -- -- 0.262 12.9 1.115 16754 -- --
68.91 0.388 9.17 -0.327 -- -- -- -- 0.202 -- -- -- -- --
25.75 0.237 9.15 -- 0.859 -- -- -- 0.251 12.9 -- -- -- --
71.05 0.393 9.16 -- -- 0.128 -- -- 0.27 -- -3.262e-07 34038 -- --
71.73 0.395 9.16 -- -- -- -- -- 0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.73 atmosphere 1000.0 10 > th dose independent rect. 5 22
3 20.78 atmosphere 1000.0 10 > th dose dependent rect. 3 2
4 20.80 atmosphere 1000.0 90 > th dose dependent rect. 2 3
5 20.81 atmosphere 1005.0 270 > th dose dependent rect. 24 5
7 20.83 radiation 20.0 30 < th dose dependent rect. 5 22
8 20.85 humidity 50.0 10 > th dose independent rect. 5 22
10 20.87 atmosphere 1005.0 270 > th dose independent rect. 24 5
17 20.89 wind 1.0 90 > th dose independent rect. 2 3
18 20.89 temperature 30.0 720 < th dose independent rect. 13 3
21 20.91 temperature 30.0 720 < th dose independent rect. 14 1
26 20.94 radiation 10.0 30 < th dose independent rect. 5 22
29 20.96 wind 5.0 10 < th dose independent rect. 3 2
30 20.96 wind 1.0 10 > th dose independent rect. 2 3
35 20.98 atmosphere 1005.0 90 > th dose independent rect. 3 2
53 21.01 precipitation 0.1 10 < th dose independent rect. 5 22
54 21.01 temperature 30.0 270 < th dose independent rect. 23 23
57 21.01 precipitation 0.1 10 < th dose dependent rect. 5 22
61 21.03 precipitation 0.1 43200 > th dose dependent rect. 19 2
62 21.03 humidity 50.0 10 > th dose dependent rect. 5 22
66 21.04 humidity 80.0 10 > th dose independent rect. 3 2
67 21.04 atmosphere 1000.0 10 > th dose independent rect. 3 2
68 21.04 precipitation 0.1 10 < th dose independent rect. 3 2
69 21.04 humidity 50.0 720 > th dose independent rect. 12 5
71 21.04 temperature 25.0 90 > th dose dependent rect. 19 2
72 21.04 precipitation 0.1 10 < th dose dependent rect. 3 2
80 21.06 temperature 10.0 10 > th dose independent rect. 3 2
82 21.06 temperature 30.0 10 < th dose independent rect. 3 2
83 21.06 humidity 50.0 10 > th dose independent rect. 3 2
89 21.06 atmosphere 1010.0 10 < th dose independent rect. 3 2
91 21.06 radiation 1.0 10 < th dose independent rect. 3 2
97 21.06 temperature 10.0 10 > th dose independent rect. 5 22
99 21.06 radiation 10.0 10 < th dose dependent rect. 3 2
112 21.07 precipitation 0.1 43200 > th dose dependent rect. 17 4
138 21.09 wind 9.0 10 < th dose dependent rect. 3 2
145 21.09 radiation 20.0 30 < th dose dependent rect. 11 15
159 21.12 humidity 60.0 720 > th dose independent rect. 14 1
163 21.12 atmosphere 1005.0 10 > th dose dependent rect. 1 5
164 21.12 humidity 50.0 90 > th dose dependent rect. 13 13
172 21.13 humidity 50.0 10 > th dose dependent rect. 3 2
182 21.14 temperature 30.0 720 < th dose independent rect. 12 12
184 21.14 temperature 10.0 10 > th dose dependent rect. 3 2
192 21.15 humidity 90.0 270 < th dose independent rect. 1 4
193 21.15 humidity 70.0 90 > th dose independent rect. 13 13
194 21.15 temperature 30.0 720 < th dose independent rect. 10 18
217 21.16 humidity 50.0 14400 < th dose independent rect. 15 20
228 21.16 humidity 50.0 10 > th dose dependent rect. 13 13
258 21.17 humidity 50.0 720 > th dose independent rect. 5 19
259 21.17 humidity 50.0 14400 > th dose independent rect. 15 20
261 21.17 humidity 50.0 720 > th dose dependent rect. 14 1
271 21.17 radiation 10.0 43200 < th dose dependent rect. 23 4
274 21.18 humidity 50.0 14400 < th dose independent rect. 15 2
286 21.19 humidity 50.0 14400 > th dose independent rect. 15 2
304 21.19 atmosphere 1005.0 10 > th dose independent rect. 2 7
307 21.19 humidity 60.0 720 > th dose independent rect. 21 20
328 21.20 radiation 20.0 90 < th dose independent rect. 11 15
330 21.20 temperature 30.0 720 < th dose independent rect. 6 23
334 21.20 radiation 40.0 10 < th dose dependent rect. 12 14
352 21.22 temperature 25.0 90 > th dose independent rect. 19 1
359 21.22 temperature 30.0 720 < th dose independent rect. 13 20
374 21.23 humidity 50.0 14400 > th dose independent sin 11 NA
375 21.23 humidity 50.0 14400 < th dose independent sin 11 NA
389 21.23 humidity 50.0 14400 > th dose independent rect. 15 4
432 21.24 temperature 30.0 720 < th dose independent rect. 5 11
433 21.24 humidity 60.0 720 > th dose independent rect. 5 11
434 21.24 humidity 50.0 720 > th dose independent rect. 13 11
436 21.24 humidity 50.0 720 > th dose independent rect. 12 13
447 21.24 temperature 30.0 30 < th dose dependent rect. 2 3
461 21.25 wind 1.0 14400 > th dose independent rect. 1 3
464 21.25 wind 5.0 43200 > th dose independent rect. 18 4
465 21.25 wind 5.0 43200 < th dose independent rect. 18 4
470 21.25 radiation 10.0 43200 > th dose independent rect. 7 6
490 21.25 temperature 30.0 720 < th dose independent rect. 5 19
491 21.25 temperature 30.0 720 < th dose independent rect. 21 20
492 21.25 humidity 50.0 720 > th dose independent rect. 13 20
494 21.25 temperature 30.0 720 < th dose independent rect. 13 23
505 21.26 precipitation 0.1 43200 < th dose independent rect. 19 2
519 21.26 wind 9.0 10 < th dose independent rect. 5 22
522 21.26 radiation 20.0 43200 < th dose dependent rect. 9 1
525 21.26 precipitation 0.1 43200 < th dose dependent rect. 19 2
528 21.26 radiation 10.0 43200 < th dose dependent rect. 7 4
577 21.27 humidity 50.0 720 > th dose dependent rect. 5 19
579 21.28 humidity 70.0 270 < th dose independent rect. 19 1
580 21.28 radiation 20.0 43200 > th dose independent rect. 11 1
582 21.28 precipitation 0.1 43200 > th dose independent rect. 19 2
616 21.28 wind 5.0 43200 > th dose dependent rect. 18 4
619 21.28 temperature 10.0 720 > th dose dependent rect. 10 10
627 21.29 wind 1.0 14400 < th dose independent rect. 1 3
659 21.29 radiation 10.0 43200 < th dose dependent rect. 7 6
666 21.29 humidity 50.0 720 > th dose dependent rect. 12 20
670 21.30 radiation 10.0 43200 > th dose independent rect. 7 3
707 21.30 atmosphere 995.0 43200 < th dose dependent rect. 15 9
714 21.31 wind 9.0 4320 < th dose independent rect. 3 3
737 21.31 wind 1.0 14400 < th dose dependent rect. 2 2
747 21.32 humidity 90.0 10 < th dose independent rect. 2 4
748 21.32 wind 1.0 14400 < th dose independent rect. 1 5
753 21.32 temperature 30.0 720 > th dose independent rect. 10 6
783 21.32 humidity 70.0 270 > th dose dependent rect. 22 1
784 21.32 radiation 1.0 43200 < th dose dependent rect. 1 1
787 21.32 radiation 20.0 43200 < th dose dependent rect. 9 3
790 21.32 humidity 90.0 720 < th dose dependent rect. 10 10
808 21.33 temperature 10.0 1440 > th dose independent rect. 3 3
811 21.33 temperature 30.0 1440 < th dose independent rect. 3 3
815 21.33 humidity 50.0 1440 > th dose independent rect. 3 3
826 21.33 atmosphere 995.0 1440 > th dose independent rect. 3 3
827 21.33 radiation 20.0 1440 < th dose independent rect. 3 3
850 21.33 temperature 10.0 1440 > th dose independent rect. 6 21
865 21.33 atmosphere 1005.0 10 > th dose dependent rect. 1 8
868 21.33 atmosphere 995.0 90 > th dose dependent rect. 13 13
875 21.33 humidity 50.0 720 > th dose dependent rect. 20 21
877 21.34 radiation 10.0 43200 > th dose independent sin 7 NA
930 21.34 radiation 1.0 43200 < th dose dependent rect. 19 5
931 21.34 radiation 1.0 43200 < th dose dependent rect. 19 7
948 21.35 atmosphere 995.0 43200 > th dose independent sin 14 NA
950 21.35 atmosphere 995.0 43200 < th dose independent sin 14 NA
954 21.35 radiation 40.0 43200 > th dose independent rect. 14 1
959 21.35 temperature 30.0 720 < th dose independent rect. 4 6
961 21.35 atmosphere 995.0 43200 < th dose independent rect. 14 15
966 21.35 atmosphere 995.0 43200 > th dose independent rect. 14 17
972 21.35 atmosphere 995.0 43200 > th dose independent rect. 12 18
985 21.35 temperature 30.0 720 > th dose independent rect. 18 22
994 21.35 humidity 70.0 270 < th dose dependent rect. 19 1