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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0138400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0216) R2 : 0.0229
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.149 (0.0456) R2dN8 : 0.0296 R2N8 : 0.0229
σ : 0.408
deviance : 76.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.71 0.401 2.94 -0.0676 0.0755 -0.347 0.103 1.23 0.138 9.89 1.069 16 -- --
74 0.401 2.92 -0.0204 0.081 -0.262 0.156 -- 0.152 9.95 1.094 16 -- --
72.75 0.397 2.94 -0.0642 0.075 -0.347 -- 1.25 0.138 9.86 1.069 16 -- --
74.08 0.401 2.92 -0.0128 0.0823 -0.253 -- -- 0.152 9.27 1.1 16 -- --
73.09 0.398 2.94 -0.0661 -- -0.35 -- 1.27 0.138 -- 1.057 16 -- --
75.45 0.407 2.92 0.0158 0.121 -- 0.0631 -- 0.149 7.2 -- -- -- --
75.46 0.407 2.92 0.0169 0.122 -- -- -- 0.149 7.04 -- -- -- --
74.46 0.402 2.93 -0.016 -- -0.242 -- -- 0.153 -- 1.139 16 -- --
74.08 0.401 2.92 -- 0.0825 -0.25 -- -- 0.153 9.22 1.093 16 -- --
76.24 0.408 2.93 0.0193 -- -- -- -- 0.151 -- -- -- -- --
75.47 0.406 2.92 -- 0.122 -- -- -- 0.147 7.03 -- -- -- --
74.47 0.402 2.93 -- -- -0.24 -- -- 0.155 -- 1.17 16 -- --
76.25 0.408 2.93 -- -- -- -- -- 0.149 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.62 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 66.63 wind 3.0 30 < th dose dependent rect. 2 1
3 66.64 wind 3.0 30 < th dose independent rect. 2 1
7 66.64 temperature 15.0 30 > th dose dependent rect. 2 1
15 66.66 temperature 10.0 30 > th dose independent rect. 2 1
18 66.66 temperature 25.0 30 < th dose independent rect. 2 1
20 66.66 humidity 50.0 30 > th dose independent rect. 2 1
24 66.66 atmosphere 995.0 30 > th dose independent rect. 2 1
25 66.66 atmosphere 1005.0 30 > th dose independent rect. 2 1
26 66.66 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 66.66 radiation 1.0 30 < th dose independent rect. 2 1
33 66.66 precipitation 0.1 30 < th dose independent rect. 2 1
34 66.66 temperature 10.0 30 > th dose independent rect. 3 23
35 66.66 humidity 50.0 30 > th dose dependent rect. 2 1
40 66.66 radiation 1.0 30 < th dose dependent rect. 2 1
45 66.66 precipitation 0.1 30 < th dose dependent rect. 2 1
47 66.67 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 66.69 temperature 30.0 30 < th dose dependent rect. 2 1
51 66.71 atmosphere 1015.0 30 < th dose independent rect. 3 23
55 66.77 wind 1.0 30 > th dose independent rect. 2 1
103 66.99 wind 9.0 30 < th dose independent rect. 3 23
105 67.03 atmosphere 995.0 30 > th dose independent rect. 3 23
106 67.03 precipitation 0.1 30 < th dose independent rect. 3 23
107 67.03 precipitation 0.1 30 < th dose dependent rect. 3 23
123 67.59 radiation 1.0 14400 < th dose dependent rect. 3 1
129 67.61 wind 9.0 1440 < th dose independent rect. 3 1
130 67.61 temperature 10.0 1440 > th dose independent rect. 3 1
133 67.61 temperature 30.0 1440 < th dose independent rect. 3 1
137 67.61 humidity 50.0 1440 > th dose independent rect. 3 1
146 67.61 atmosphere 995.0 1440 > th dose independent rect. 3 1
147 67.61 radiation 1.0 1440 < th dose independent rect. 3 1
167 67.61 temperature 10.0 1440 > th dose independent rect. 4 23
170 67.61 radiation 1.0 1440 < th dose dependent rect. 3 1
187 68.25 humidity 50.0 30 > th dose independent rect. 3 23
251 70.41 humidity 90.0 90 < th dose independent rect. 2 1
258 70.60 wind 1.0 30 < th dose independent rect. 10 1
259 70.60 temperature 10.0 1440 > th dose independent rect. 11 1
263 70.60 atmosphere 995.0 1440 > th dose independent rect. 11 1
266 70.60 precipitation 0.1 1440 < th dose independent rect. 11 1
267 70.60 temperature 10.0 1440 > th dose independent rect. 12 23
270 70.60 wind 1.0 30 < th dose dependent rect. 10 1
271 70.60 precipitation 0.1 1440 < th dose dependent rect. 11 1
276 70.65 humidity 70.0 30 < th dose independent rect. 10 1
280 70.71 temperature 25.0 30 > th dose dependent rect. 10 1
282 70.72 humidity 80.0 30 < th dose dependent rect. 10 1
285 70.76 radiation 40.0 30 < th dose independent rect. 10 1
291 70.80 wind 5.0 30 < th dose dependent rect. 10 1
299 70.87 temperature 30.0 30 < th dose independent rect. 3 23
301 70.88 atmosphere 1005.0 30 > th dose independent rect. 10 1
303 70.88 atmosphere 1005.0 30 > th dose dependent rect. 10 1
305 70.89 temperature 25.0 30 > th dose independent rect. 10 1
306 70.89 radiation 20.0 30 > th dose independent rect. 10 1
310 70.91 atmosphere 1010.0 30 < th dose independent rect. 10 1
317 70.95 temperature 30.0 30 < th dose independent rect. 10 1
318 70.95 humidity 60.0 30 > th dose independent rect. 10 1
320 70.96 temperature 10.0 30 > th dose independent rect. 10 1
327 70.96 precipitation 0.1 30 < th dose independent rect. 10 1
328 70.96 temperature 10.0 30 > th dose independent rect. 11 23
329 70.96 precipitation 0.1 30 < th dose dependent rect. 10 1
330 70.98 wind 1.0 30 > th dose independent rect. 10 1
332 71.03 radiation 40.0 30 < th dose dependent rect. 10 1
334 71.09 radiation 1.0 30 > th dose dependent rect. 10 1
351 71.24 atmosphere 1015.0 30 < th dose dependent rect. 10 1
361 71.35 radiation 20.0 10 < th dose dependent rect. 3 23
365 71.42 wind 1.0 10 > th dose independent rect. 11 23
370 71.44 humidity 50.0 30 > th dose dependent rect. 10 1
395 71.65 wind 1.0 30 > th dose dependent rect. 10 1
432 71.81 wind 1.0 30 < th dose independent rect. 8 19
444 71.83 atmosphere 1015.0 1440 < th dose independent rect. 3 1
452 71.85 wind 1.0 30 > th dose dependent rect. 2 1
466 71.93 temperature 10.0 30 > th dose dependent rect. 3 23
467 71.94 radiation 10.0 10 < th dose independent rect. 3 23
470 71.94 wind 3.0 30 < th dose dependent rect. 10 17
486 72.01 wind 1.0 30 > th dose independent rect. 3 23
524 72.16 wind 9.0 30 < th dose independent rect. 11 23
528 72.18 wind 1.0 10 > th dose independent sin 16 NA
529 72.18 temperature 25.0 270 > th dose independent rect. 23 4
546 72.26 wind 3.0 30 < th dose dependent rect. 22 5
553 72.32 temperature 25.0 10 > th dose independent rect. 24 9
554 72.33 temperature 25.0 30 > th dose independent rect. 24 7
559 72.37 humidity 90.0 10 > th dose independent rect. 24 3
563 72.38 humidity 50.0 30 > th dose dependent rect. 3 23
570 72.41 temperature 25.0 10 > th dose independent rect. 14 19
579 72.45 atmosphere 1015.0 30 < th dose independent rect. 11 23
587 72.48 wind 9.0 30 < th dose dependent rect. 3 23
591 72.49 temperature 25.0 10 > th dose independent rect. 12 22
609 72.54 temperature 25.0 10 > th dose independent rect. 16 17
619 72.56 temperature 10.0 90 > th dose dependent rect. 3 6
632 72.60 temperature 25.0 270 > th dose dependent rect. 23 4
653 72.65 temperature 25.0 10 > th dose independent rect. 14 17
657 72.66 atmosphere 1015.0 10 < th dose independent rect. 14 12
666 72.67 atmosphere 995.0 90 > th dose dependent rect. 3 6
671 72.68 wind 1.0 10 > th dose independent rect. 24 10
673 72.68 atmosphere 995.0 90 > th dose dependent rect. 9 18
674 72.68 atmosphere 995.0 10 > th dose dependent rect. 10 18
702 72.72 temperature 25.0 10 > th dose independent rect. 16 15
721 72.76 radiation 20.0 90 < th dose independent rect. 3 8
739 72.81 atmosphere 1015.0 720 < th dose independent rect. 3 20
745 72.82 wind 1.0 10 > th dose independent rect. 14 17
752 72.85 radiation 40.0 30 < th dose independent rect. 3 23
760 72.86 wind 9.0 90 < th dose independent rect. 3 6
761 72.86 temperature 10.0 90 > th dose independent rect. 3 6
763 72.86 humidity 50.0 90 > th dose independent rect. 3 6
764 72.86 atmosphere 995.0 90 > th dose independent rect. 3 6
765 72.86 atmosphere 1015.0 90 < th dose independent rect. 3 6
767 72.86 wind 1.0 10 > th dose independent rect. 16 15
769 72.86 temperature 10.0 90 > th dose independent rect. 9 18
770 72.86 precipitation 0.1 90 < th dose independent rect. 9 18
772 72.86 precipitation 0.1 90 < th dose dependent rect. 9 18
775 72.87 precipitation 0.1 90 < th dose independent rect. 3 6
776 72.87 temperature 25.0 10 > th dose independent rect. 12 19
778 72.87 precipitation 0.1 90 < th dose dependent rect. 3 6
783 72.88 temperature 30.0 90 < th dose independent rect. 3 6
807 72.92 radiation 40.0 90 < th dose independent rect. 3 6
809 72.93 temperature 25.0 10 > th dose independent rect. 18 15
813 72.93 temperature 15.0 270 > th dose dependent rect. 3 3
818 72.94 radiation 40.0 90 < th dose dependent rect. 3 7
822 72.95 humidity 70.0 90 > th dose independent rect. 3 8
829 72.96 wind 9.0 90 < th dose independent rect. 9 18
850 72.99 precipitation 0.1 30 < th dose independent rect. 11 23
854 72.99 precipitation 0.1 30 < th dose dependent rect. 11 23
860 73.00 humidity 80.0 4320 < th dose dependent rect. 4 2
883 73.02 wind 1.0 90 > th dose independent rect. 3 6
888 73.02 atmosphere 995.0 30 > th dose independent rect. 11 23
910 73.04 wind 1.0 10 > th dose independent rect. 14 19
920 73.05 atmosphere 1015.0 270 < th dose independent rect. 11 11
928 73.06 temperature 25.0 10 > th dose independent sin 9 NA
950 73.07 humidity 80.0 4320 < th dose independent rect. 3 1
961 73.07 atmosphere 1015.0 30 < th dose dependent rect. 3 23
962 73.08 atmosphere 995.0 90 > th dose independent rect. 9 18
972 73.09 temperature 25.0 10 < th dose independent rect. 24 3
976 73.09 wind 9.0 90 < th dose dependent rect. 3 6
981 73.10 humidity 50.0 1440 > th dose independent rect. 4 7
994 73.11 humidity 50.0 90 > th dose dependent rect. 3 6