Os07g0137600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0137600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.18 | 0.319 | 12.8 | 0.417 | 0.474 | 0.69 | 0.617 | -1.05 | 0.161 | 17.1 | 16.61 | 668 | -- | -- |
| 47.18 | 0.32 | 12.8 | 0.591 | 0.583 | 0.586 | 0.521 | -- | 0.204 | 17.6 | 16.39 | 1944 | -- | -- |
| 47.08 | 0.32 | 12.8 | 0.468 | 0.481 | 0.697 | -- | -0.786 | 0.178 | 17.1 | 16.44 | 678 | -- | -- |
| 47.31 | 0.322 | 12.8 | 0.636 | 0.517 | 0.776 | -- | -- | 0.211 | 19.4 | 16.39 | 1944 | -- | -- |
| 53.47 | 0.341 | 12.8 | 0.5 | -- | 0.942 | -- | -0.41 | 0.125 | -- | 19.83 | 384 | -- | -- |
| 53.62 | 0.343 | 12.7 | 0.801 | 0.617 | -- | 0.506 | -- | 0.328 | 17.8 | -- | -- | -- | -- |
| 54.23 | 0.345 | 12.7 | 0.797 | 0.621 | -- | -- | -- | 0.33 | 17.9 | -- | -- | -- | -- |
| 53.85 | 0.342 | 12.8 | 0.575 | -- | 0.899 | -- | -- | 0.162 | -- | 19.73 | 384 | -- | -- |
| 47.1 | 0.32 | 12.8 | -- | 0.623 | 0.89 | -- | -- | -0.0134 | 17.8 | 11.35 | 19766 | -- | -- |
| 74.19 | 0.402 | 12.7 | 0.778 | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
| 70.95 | 0.394 | 12.8 | -- | 0.609 | -- | -- | -- | 0.241 | 18 | -- | -- | -- | -- |
| 61.06 | 0.364 | 12.8 | -- | -- | 1.25 | -- | -- | 0.0813 | -- | 15.83 | 402 | -- | -- |
| 90.16 | 0.443 | 12.8 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 11 | 45.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 19 | 45.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 26 | 45.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 44 | 45.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 58 | 45.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 59 | 45.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 75 | 45.65 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 76 | 45.65 | temperature | 10 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 84 | 45.67 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 90 | 45.69 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 101 | 45.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 104 | 45.71 | temperature | 30 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 106 | 45.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 4 |
| 114 | 45.72 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 116 | 45.72 | temperature | 10 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 130 | 45.73 | temperature | 30 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 208 | 45.75 | temperature | 10 | 43200 | > th | dose dependent | sin | 21 | NA |
| 233 | 45.75 | temperature | 30 | 43200 | < th | dose dependent | rect. | 12 | 8 |
| 249 | 45.76 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 298 | 45.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 348 | 45.77 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 12 |
| 368 | 45.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 371 | 45.78 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 21 |
| 412 | 45.78 | temperature | 30 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 448 | 45.79 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 454 | 45.79 | temperature | 30 | 43200 | < th | dose dependent | sin | 20 | NA |
| 464 | 45.79 | temperature | 30 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 500 | 45.79 | temperature | 30 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 589 | 45.80 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 664 | 45.81 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 870 | 45.83 | humidity | 80 | 14400 | < th | dose independent | sin | 3 | NA |
| 890 | 45.83 | temperature | 10 | 43200 | > th | dose dependent | no | NA | NA |
| 977 | 45.83 | temperature | 10 | 43200 | > th | dose dependent | rect. | 12 | 21 |
| 986 | 45.83 | temperature | 10 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 988 | 45.83 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 22 |