Os07g0137500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0137500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.33 | 0.67 | 6.53 | 0.0915 | 1.07 | -0.971 | -0.229 | -2.62 | 1.08 | 0.0108 | 999.9 | 11068 | -- | -- |
| 207.88 | 0.672 | 6.6 | -0.49 | 1.1 | -1.32 | -0.282 | -- | 0.937 | 0.138 | 983.6 | 13632 | -- | -- |
| 202.87 | 0.663 | 6.54 | 0.156 | 1.1 | -1.02 | -- | -2.64 | 1.06 | 24 | 1002 | 12683 | -- | -- |
| 208.23 | 0.672 | 6.6 | -0.474 | 1.1 | -1.32 | -- | -- | 0.94 | 0.086 | 994.9 | 13573 | -- | -- |
| 272.84 | 0.769 | 6.54 | 0.367 | -- | -0.831 | -- | -2.28 | 0.961 | -- | 1008 | 14597 | -- | -- |
| 240.69 | 0.727 | 6.59 | -0.181 | 1.08 | -- | -0.208 | -- | 0.998 | 0.08 | -- | -- | -- | -- |
| 240.87 | 0.727 | 6.58 | -0.173 | 1.08 | -- | -- | -- | 0.999 | 0.0733 | -- | -- | -- | -- |
| 283.25 | 0.784 | 6.58 | -0.448 | -- | -1.29 | -- | -- | 0.953 | -- | 994.8 | 13820 | -- | -- |
| 213.93 | 0.681 | 6.58 | -- | 1.09 | -1.18 | -- | -- | 1 | 0.0466 | 994.7 | 13122 | -- | -- |
| 314.6 | 0.829 | 6.56 | -0.138 | -- | -- | -- | -- | 1.01 | -- | -- | -- | -- | -- |
| 241.66 | 0.727 | 6.58 | -- | 1.08 | -- | -- | -- | 1.02 | 0.0644 | -- | -- | -- | -- |
| 288.14 | 0.791 | 6.56 | -- | -- | -1.15 | -- | -- | 1.01 | -- | 994.7 | 13769 | -- | -- |
| 315.1 | 0.829 | 6.56 | -- | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.06 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 10 | 192.71 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 24 | 193.09 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 29 | 193.20 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 30 | 193.21 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 34 | 193.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 37 | 193.34 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 38 | 193.37 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 42 | 193.46 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 44 | 193.46 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 48 | 193.48 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 66 | 193.65 | temperature | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 84 | 193.72 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 87 | 193.78 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 89 | 193.79 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 90 | 193.81 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 98 | 193.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 107 | 193.85 | temperature | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 109 | 193.86 | temperature | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 111 | 193.89 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 112 | 193.89 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 189 | 194.13 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 196 | 194.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 210 | 194.24 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 217 | 194.27 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 291 | 194.32 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 299 | 194.33 | temperature | 30 | 43200 | > th | dose dependent | rect. | 18 | 19 |
| 303 | 194.34 | temperature | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 311 | 194.36 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 358 | 194.40 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 368 | 194.45 | temperature | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 371 | 194.45 | radiation | 10 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 407 | 194.53 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 428 | 194.57 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 458 | 194.62 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 472 | 194.68 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 481 | 194.71 | humidity | 70 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 490 | 194.74 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 495 | 194.75 | humidity | 70 | 43200 | > th | dose independent | sin | 16 | NA |
| 503 | 194.77 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 536 | 194.81 | humidity | 70 | 43200 | < th | dose independent | sin | 16 | NA |
| 558 | 194.82 | humidity | 70 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 564 | 194.83 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 571 | 194.85 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 657 | 194.94 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 772 | 195.04 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 789 | 195.06 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 839 | 195.11 | radiation | 10 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 937 | 195.23 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 946 | 195.25 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 949 | 195.25 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 995 | 195.30 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 19 |