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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0134200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LRR receptor-like kinase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.8 (0.0419) R2 : 0.615
β1 : -1.36 (0.156) R2dD : 0.0693 R2D : 0.0252
β2 : 1.64 (0.105) R2dC : 0.225 R2C : 0.34
β3 : 2.19 (0.138) R2dE : 0.237 R2E : 0.299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.346 (0.0893) R2dN8 : 0.017 R2N8 : 0.0169
σ : 0.782
deviance : 282.1
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_____
C
peak time of C : 22.4
E
wheather : temperature
threshold : 26
memory length : 907
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.79
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
281.28 0.788 4.81 -1.5 1.65 2.26 0.523 -1.02 0.349 22.5 26.13 895 7.43 --
281.35 0.781 4.8 -1.33 1.65 2.18 0.469 -- 0.35 22.4 26.01 898 7.59 --
282.16 0.782 4.8 -1.47 1.65 2.22 -- -0.625 0.343 22.4 26.11 907 7.74 --
282.1 0.782 4.8 -1.36 1.64 2.19 -- -- 0.346 22.4 26 907 7.79 --
371.7 0.898 4.89 -1.98 -- 3.63 -- -1.63 -0.0769 -- 21.31 778 11.5 --
420.26 0.961 4.81 -0.836 2.1 -- 1.18 -- 0.304 23.3 -- -- -- --
426.07 0.967 4.81 -0.882 2.1 -- -- -- 0.301 23.2 -- -- -- --
333.88 0.851 4.79 -1.52 -- 3.62 -- -- 0.0244 -- 8.49 930 14.1 --
329.03 0.845 4.78 -- 1.71 1.96 -- -- 0.493 22.4 26.13 910 7.57 --
701.55 1.24 4.76 -0.832 -- -- -- -- 0.319 -- -- -- -- --
446.57 0.989 4.79 -- 2.09 -- -- -- 0.399 23.1 -- -- -- --
388.41 0.918 4.77 -- -- 3.29 -- -- 0.23 -- 5.393 908 14 --
719.8 1.25 4.74 -- -- -- -- -- 0.411 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 278.42 temperature 25 720 > th dose dependent rect. 17 7
21 287.75 temperature 30 720 > th dose dependent rect. 18 1
57 293.32 temperature 20 10 > th dose dependent rect. 3 3
58 293.63 humidity 70 720 < th dose independent rect. 18 14
61 294.06 humidity 70 720 < th dose independent rect. 18 2
89 295.06 temperature 20 90 > th dose independent rect. 3 2
108 296.74 temperature 30 720 > th dose independent rect. 18 1
123 297.13 temperature 25 720 > th dose dependent sin 12 NA
126 297.55 wind 3 90 < th dose dependent rect. 3 2
127 297.58 humidity 70 720 > th dose independent rect. 19 8
129 297.75 humidity 70 720 < th dose dependent rect. 19 1
140 297.81 temperature 20 10 > th dose independent rect. 3 3
174 300.25 temperature 20 270 > th dose dependent rect. 24 5
176 300.61 temperature 20 10 > th dose dependent rect. 24 6
181 301.83 humidity 70 720 < th dose dependent rect. 18 14
182 302.03 wind 3 10 < th dose dependent rect. 3 3
185 302.35 humidity 70 720 > th dose independent sin 12 NA
200 302.51 temperature 20 270 > th dose dependent rect. 1 3
201 302.72 humidity 50 1440 < th dose independent rect. 16 1
207 303.02 radiation 20 1440 > th dose independent rect. 16 16
228 303.51 humidity 50 1440 < th dose dependent rect. 16 1
232 303.76 humidity 50 1440 > th dose independent rect. 16 1
256 305.77 temperature 30 720 < th dose independent rect. 17 16
276 306.95 humidity 70 720 > th dose independent rect. 17 15
359 307.81 radiation 1 720 > th dose independent rect. 18 1
372 307.87 radiation 10 1440 > th dose dependent rect. 16 15
387 308.34 radiation 30 14400 > th dose independent rect. 16 16
391 308.42 temperature 30 720 < th dose independent rect. 16 8
443 309.16 radiation 20 1440 < th dose dependent rect. 16 1
445 309.16 humidity 80 90 > th dose dependent rect. 3 2
487 309.47 radiation 30 14400 > th dose independent rect. 7 1
503 309.49 radiation 20 1440 < th dose dependent rect. 16 14
531 309.88 radiation 20 1440 < th dose dependent rect. 16 11
533 309.89 radiation 20 1440 < th dose dependent rect. 16 9
538 310.08 radiation 40 1440 < th dose dependent rect. 18 9
559 310.30 radiation 20 1440 < th dose independent rect. 16 11
560 310.31 temperature 30 1440 > th dose dependent no NA NA
652 310.32 radiation 20 1440 < th dose independent rect. 16 9
658 310.47 radiation 20 1440 < th dose dependent rect. 16 5
672 310.70 temperature 10 90 > th dose dependent rect. 15 14
674 310.71 radiation 40 1440 < th dose dependent rect. 16 11
676 310.74 radiation 40 1440 < th dose dependent rect. 16 9
678 310.77 temperature 10 10 > th dose dependent rect. 15 15
704 310.90 temperature 30 1440 < th dose independent rect. 17 4
729 311.03 radiation 20 1440 < th dose independent rect. 16 5
734 311.11 radiation 20 1440 < th dose independent rect. 16 1
745 311.24 radiation 1 1440 > th dose dependent rect. 16 2
787 311.59 wind 3 90 < th dose independent rect. 3 2
809 311.78 radiation 40 1440 < th dose dependent rect. 16 5
893 312.55 radiation 10 1440 > th dose independent rect. 16 20
894 312.59 radiation 40 1440 < th dose dependent rect. 16 1
929 312.87 radiation 40 1440 > th dose dependent rect. 13 22
967 313.34 temperature 30 1440 > th dose independent sin 12 NA
972 313.42 humidity 50 90 > th dose dependent rect. 5 22
1000 313.79 temperature 30 1440 < th dose independent sin 12 NA