Os07g0133000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0133000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.16 | 0.835 | 5.87 | 0.655 | 0.832 | -2.79 | 2.83 | 0.868 | 0.554 | 17.1 | 20.99 | 748 | 4.44 | -- |
| 317.93 | 0.83 | 5.85 | 0.794 | 0.828 | -2.81 | 2.64 | -- | 0.581 | 17 | 21 | 767 | 4.73 | -- |
| 328.28 | 0.844 | 5.86 | 0.725 | 1.01 | -2.67 | -- | 0.283 | 0.598 | 18.3 | 21 | 861 | 5.23 | -- |
| 328.45 | 0.844 | 5.86 | 0.818 | 1.02 | -2.64 | -- | -- | 0.613 | 18.4 | 21 | 861 | 5.33 | -- |
| 368.71 | 0.894 | 5.84 | 0.912 | -- | -2.94 | -- | -0.274 | 0.559 | -- | 21.3 | 630 | 4.16 | -- |
| 516.6 | 1.07 | 5.73 | 1.55 | 1.38 | -- | -0.25 | -- | 1.22 | 19.6 | -- | -- | -- | -- |
| 516.7 | 1.06 | 5.73 | 1.56 | 1.38 | -- | -- | -- | 1.22 | 19.5 | -- | -- | -- | -- |
| 365.24 | 0.89 | 5.84 | 0.863 | -- | -3.02 | -- | -- | 0.538 | -- | 20.95 | 597 | 3.85 | -- |
| 341.72 | 0.861 | 5.89 | -- | 1.12 | -2.71 | -- | -- | 0.469 | 18.2 | 20.99 | 984 | 5.45 | -- |
| 618.42 | 1.16 | 5.7 | 1.54 | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
| 580.7 | 1.13 | 5.77 | -- | 1.37 | -- | -- | -- | 1.04 | 19.6 | -- | -- | -- | -- |
| 382.17 | 0.91 | 5.87 | -- | -- | -3.27 | -- | -- | 0.471 | -- | 21 | 594 | 3.66 | -- |
| 680.81 | 1.22 | 5.74 | -- | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 323.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 2 | 324.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 9 | 325.89 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 119 | 342.98 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 9 |
| 186 | 348.66 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 193 | 349.37 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 18 |
| 198 | 349.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 226 | 351.36 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 245 | 352.18 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 264 | 353.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 288 | 354.77 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 289 | 354.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 303 | 355.54 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 305 | 355.58 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 10 |
| 329 | 356.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 341 | 356.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 344 | 356.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 365 | 357.45 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 453 | 360.35 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 489 | 361.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 564 | 362.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 615 | 363.72 | temperature | 30 | 10 | < th | dose dependent | sin | 7 | NA |
| 636 | 364.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 655 | 364.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 675 | 364.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 678 | 364.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 697 | 365.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 729 | 365.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |