Os07g0132500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein candidate (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0132500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Resistance protein candidate (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 304.63 | 0.82 | 4.86 | 1.78 | 1.62 | 0.491 | -0.25 | 4.25 | 1.3 | 3.85 | 1000 | 10 | -- | -- |
| 303.91 | 0.812 | 4.81 | 2.03 | 1.67 | 1.4 | -0.000254 | -- | 1.27 | 3.86 | 999.4 | 6 | -- | -- |
| 304.51 | 0.819 | 4.85 | 1.83 | 1.61 | 0.622 | -- | 3.47 | 1.3 | 3.84 | 1000 | 8 | -- | -- |
| 300.72 | 0.813 | 4.81 | 2.08 | 1.63 | 1.35 | -- | -- | 1.29 | 3.92 | 999.6 | 5 | -- | -- |
| 446.53 | 0.99 | 4.85 | 1.9 | -- | 0.687 | -- | 3.43 | 1.33 | -- | 1002 | 15 | -- | -- |
| 348.07 | 0.875 | 4.8 | 1.85 | 1.65 | -- | -0.101 | -- | 1.38 | 3.84 | -- | -- | -- | -- |
| 348.1 | 0.874 | 4.8 | 1.85 | 1.65 | -- | -- | -- | 1.38 | 3.84 | -- | -- | -- | -- |
| 445.66 | 0.988 | 4.82 | 2.16 | -- | 1.41 | -- | -- | 1.33 | -- | 999.6 | 5 | -- | -- |
| 411.42 | 0.95 | 4.86 | -- | 1.67 | 1.01 | -- | -- | 1.09 | 3.88 | 999.6 | 5 | -- | -- |
| 497.04 | 1.04 | 4.8 | 1.92 | -- | -- | -- | -- | 1.42 | -- | -- | -- | -- | -- |
| 438.3 | 0.979 | 4.84 | -- | 1.68 | -- | -- | -- | 1.17 | 3.83 | -- | -- | -- | -- |
| 564.74 | 1.11 | 4.87 | -- | -- | 1.05 | -- | -- | 1.12 | -- | 999.6 | 5 | -- | -- |
| 594.07 | 1.14 | 4.85 | -- | -- | -- | -- | -- | 1.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 297.98 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 2 | 298.18 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 3 | 298.19 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 4 | 298.20 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 9 | 298.27 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 10 | 298.28 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 29 | 298.76 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 58 | 299.41 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 87 | 299.46 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 88 | 299.49 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 4 |
| 89 | 299.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 154 | 300.90 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 19 | 21 |
| 155 | 301.00 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 19 | 20 |
| 169 | 301.36 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 186 | 301.49 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 17 | 23 |
| 224 | 301.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 234 | 302.00 | temperature | 30 | 43200 | > th | dose dependent | sin | 9 | NA |
| 256 | 302.13 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 258 | 302.29 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 23 |
| 260 | 302.31 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 17 | 23 |
| 284 | 302.55 | humidity | 70 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 292 | 302.67 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 293 | 302.67 | radiation | 20 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 298 | 302.72 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 18 | 21 |
| 312 | 302.86 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 20 |
| 316 | 302.89 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 18 |
| 322 | 302.92 | temperature | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 323 | 302.92 | radiation | 20 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 326 | 302.95 | temperature | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 330 | 302.96 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 331 | 302.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 341 | 303.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 342 | 303.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 352 | 303.30 | wind | 3 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 390 | 303.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 392 | 303.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 410 | 303.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 416 | 303.58 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 442 | 303.85 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 13 | 23 |
| 447 | 303.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 450 | 303.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 21 |
| 509 | 304.07 | radiation | 1 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 522 | 304.16 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 15 | 23 |
| 606 | 304.52 | humidity | 80 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 615 | 304.58 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 640 | 304.74 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 648 | 304.78 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 652 | 304.78 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 7 | 23 |
| 659 | 304.80 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 669 | 304.83 | wind | 3 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 670 | 304.84 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 13 | 17 |
| 699 | 304.92 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 876 | 305.02 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 11 | 18 |
| 934 | 305.26 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 944 | 305.29 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 968 | 305.37 | atmosphere | 1000 | 720 | < th | dose independent | sin | 15 | NA |
| 974 | 305.39 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 23 |