Os07g0132400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0132400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.13 | 0.294 | 2.86 | -0.185 | 0.0862 | -0.242 | -0.0998 | 1.69 | 0.0782 | 6.17 | 29.96 | 10 | -- | -- |
| 40.03 | 0.295 | 2.85 | -0.0441 | 0.0942 | -0.125 | -0.0373 | -- | 0.0993 | 6.11 | 29.9 | 9 | -- | -- |
| 39.15 | 0.291 | 2.86 | -0.186 | 0.0869 | -0.245 | -- | 1.68 | 0.0788 | 5.98 | 29.96 | 9 | -- | -- |
| 40.03 | 0.295 | 2.85 | -0.0419 | 0.0951 | -0.125 | -- | -- | 0.0999 | 6.24 | 29.85 | 9 | -- | -- |
| 39.52 | 0.293 | 2.87 | -0.184 | -- | -0.223 | -- | 1.73 | 0.0794 | -- | 29.95 | 9 | -- | -- |
| 40.5 | 0.298 | 2.85 | -0.0213 | 0.0741 | -- | -0.14 | -- | 0.0977 | 8.04 | -- | -- | -- | -- |
| 40.56 | 0.298 | 2.85 | -0.0254 | 0.0747 | -- | -- | -- | 0.0977 | 7.82 | -- | -- | -- | -- |
| 40.48 | 0.296 | 2.85 | -0.0362 | -- | -0.099 | -- | -- | 0.101 | -- | 29.85 | 9 | -- | -- |
| 40.08 | 0.295 | 2.85 | -- | 0.0937 | -0.121 | -- | -- | 0.104 | 6.3 | 29.8 | 9 | -- | -- |
| 40.86 | 0.299 | 2.85 | -0.0246 | -- | -- | -- | -- | 0.0988 | -- | -- | -- | -- | -- |
| 40.58 | 0.298 | 2.85 | -- | 0.0745 | -- | -- | -- | 0.101 | 7.85 | -- | -- | -- | -- |
| 40.51 | 0.296 | 2.85 | -- | -- | -0.0962 | -- | -- | 0.105 | -- | 29.86 | 9 | -- | -- |
| 40.88 | 0.298 | 2.85 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.72 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 5 | 37.08 | radiation | 40.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 7 | 37.30 | radiation | 40.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 9 | 37.38 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 15 | 37.54 | radiation | 40.0 | 10 | > th | dose independent | sin | 12 | NA |
| 17 | 37.55 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 23 | 37.55 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 85 | 37.56 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 100 | 37.56 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 16 | 18 |
| 102 | 37.57 | humidity | 60.0 | 10 | < th | dose independent | rect. | 17 | 17 |
| 108 | 37.57 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 130 | 37.57 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 18 | 16 |
| 136 | 37.58 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 137 | 37.58 | humidity | 60.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 208 | 37.58 | humidity | 60.0 | 90 | < th | dose independent | rect. | 18 | 15 |
| 220 | 37.58 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 313 | 37.59 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 335 | 37.61 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 9 | 2 |
| 424 | 37.67 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 496 | 37.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 500 | 37.70 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 507 | 37.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 539 | 37.73 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 621 | 37.82 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 709 | 37.92 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 710 | 37.92 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 737 | 37.93 | radiation | 20.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 791 | 37.98 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 792 | 37.98 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 814 | 37.99 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 822 | 38.00 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 831 | 38.02 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 858 | 38.06 | wind | 1.0 | 10 | < th | dose independent | sin | 21 | NA |
| 901 | 38.07 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 907 | 38.08 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 2 |
| 951 | 38.09 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 953 | 38.09 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 962 | 38.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 967 | 38.10 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 971 | 38.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 973 | 38.10 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |