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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0132100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0488) R2 : 0.708
β1 : 1.36 (0.2) R2dD : 0.0415 R2D : -0.182
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.5 (0.385) R2dE : 0.225 R2E : 0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 25.3 (3.4) R2dD*E : 0.0958 R2D*E : -0.379
γ1 : 2.78 (0.107) R2dN8 : 0.651 R2N8 : 0.606
σ : 0.882
deviance : 358.64
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : -2.89
memory length : 44
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.02
open length of G : 1.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
344.57 0.872 3.14 1.38 0.501 4.23 -0.945 25.8 2.82 7.27 -0.6467 37 6.11 1.3
382.58 0.918 3.07 0.613 0.491 2.35 -0.605 -- 2.81 7.23 -3.799 42 6.32 0.952
346.75 0.867 3.14 1.34 0.495 4.21 -- 25.1 2.81 6.94 -2.33 36 6.02 1.25
383.47 0.912 3.08 0.599 0.489 2.39 -- -- 2.81 6.95 -1.499 6 6.62 1.23
358.64 0.882 3.17 1.36 -- 4.5 -- 25.3 2.78 -- -2.89 44 6.02 1.03
432.49 0.975 3 0.618 0.769 -- -1.06 -- 3.11 7.07 -- -- -- --
435.39 0.977 3 0.596 0.769 -- -- -- 3.11 6.91 -- -- -- --
395.09 0.926 3.1 0.609 -- 2.66 -- -- 2.78 -- -1.734 7 6.64 1.17
392.91 0.923 3.09 -- 0.497 2.39 -- -- 2.74 6.88 -1.428 6 6.69 1.17
466.43 1.01 3.02 0.612 -- -- -- -- 3.13 -- -- -- -- --
444.74 0.986 3.02 -- 0.776 -- -- -- 3.05 6.87 -- -- -- --
404.86 0.937 3.11 -- -- 2.66 -- -- 2.71 -- -1.671 7 6.65 1.15
476.3 1.02 3.03 -- -- -- -- -- 3.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 344.82 wind 9.0 1440 < th dose independent rect. 7 1
2 344.82 temperature 10.0 1440 > th dose independent rect. 7 1
6 344.82 temperature 30.0 1440 < th dose independent rect. 7 1
10 344.82 humidity 50.0 1440 > th dose independent rect. 7 1
15 344.82 atmosphere 995.0 1440 > th dose independent rect. 7 1
16 344.82 atmosphere 1015.0 1440 < th dose independent rect. 7 1
17 344.82 temperature 10.0 1440 > th dose independent rect. 8 23
20 345.36 humidity 90.0 30 < th dose independent rect. 6 1
21 345.39 radiation 1.0 30 > th dose dependent rect. 6 1
22 345.58 temperature 20.0 30 > th dose independent rect. 6 1
23 345.69 wind 3.0 30 < th dose independent rect. 6 1
24 345.92 atmosphere 995.0 30 > th dose dependent rect. 6 1
26 346.08 wind 1.0 30 > th dose independent rect. 6 1
27 346.28 atmosphere 1000.0 30 > th dose independent rect. 6 1
28 346.39 humidity 80.0 30 > th dose independent rect. 6 1
29 346.39 temperature 10.0 30 > th dose dependent rect. 6 1
30 346.45 wind 9.0 30 < th dose dependent rect. 6 1
36 346.58 temperature 10.0 30 > th dose independent rect. 6 1
38 346.58 temperature 30.0 30 < th dose independent rect. 6 1
39 346.58 humidity 50.0 30 > th dose independent rect. 6 1
43 346.58 atmosphere 1015.0 30 < th dose independent rect. 6 1
44 346.58 radiation 20.0 30 < th dose independent rect. 6 1
47 346.58 precipitation 0.1 30 < th dose independent rect. 6 1
48 346.58 temperature 10.0 30 > th dose independent rect. 7 23
49 346.58 precipitation 0.1 30 < th dose dependent rect. 6 1
53 346.90 humidity 50.0 30 > th dose dependent rect. 6 1
54 346.91 radiation 1.0 30 > th dose independent rect. 6 1
58 347.65 radiation 40.0 30 < th dose dependent rect. 6 1
68 350.75 wind 9.0 30 < th dose independent rect. 7 23
70 351.14 humidity 90.0 30 < th dose dependent rect. 6 1
72 351.70 atmosphere 1015.0 30 < th dose dependent rect. 6 1
73 351.90 temperature 30.0 30 < th dose dependent rect. 6 1
84 354.90 wind 1.0 30 > th dose dependent rect. 6 1
121 368.09 temperature 25.0 30 > th dose independent rect. 3 4
128 372.45 radiation 40.0 1440 < th dose independent rect. 7 1
131 375.13 temperature 25.0 30 > th dose dependent rect. 3 4
143 381.99 precipitation 0.1 30 < th dose independent rect. 7 23
144 381.99 precipitation 0.1 30 < th dose dependent rect. 7 23
200 384.97 temperature 30.0 14400 > th dose dependent rect. 18 1
224 386.65 humidity 80.0 4320 < th dose dependent rect. 3 1
226 386.77 humidity 90.0 10 < th dose independent rect. 4 3
228 387.44 temperature 30.0 14400 < th dose independent rect. 5 4
230 387.55 temperature 30.0 14400 > th dose independent rect. 18 15
235 387.78 temperature 30.0 14400 > th dose dependent rect. 8 1
252 388.19 temperature 30.0 14400 < th dose independent rect. 2 7
253 388.20 temperature 30.0 14400 < th dose independent rect. 20 13
257 388.34 temperature 30.0 14400 < th dose independent rect. 18 15
258 388.40 temperature 30.0 14400 > th dose independent rect. 8 1
273 388.44 atmosphere 995.0 30 > th dose independent rect. 7 23
274 388.49 temperature 25.0 14400 > th dose dependent rect. 4 1
278 388.63 temperature 30.0 14400 < th dose independent rect. 24 9
282 388.78 temperature 30.0 14400 > th dose independent rect. 18 1
303 389.21 temperature 30.0 14400 < th dose independent rect. 18 5
304 389.27 temperature 30.0 14400 < th dose independent rect. 18 1
305 389.31 temperature 30.0 14400 < th dose independent rect. 18 7
307 389.35 temperature 30.0 720 > th dose independent rect. 13 1
314 389.69 temperature 30.0 14400 < th dose independent rect. 18 9
320 389.95 temperature 30.0 14400 < th dose independent rect. 18 12
357 391.81 temperature 25.0 14400 > th dose dependent rect. 21 1
381 392.43 atmosphere 1015.0 30 < th dose independent rect. 7 23
444 393.55 humidity 80.0 4320 > th dose independent rect. 3 1
448 393.73 humidity 80.0 4320 < th dose independent rect. 3 1
519 394.78 temperature 25.0 14400 > th dose dependent rect. 20 10
605 396.35 temperature 25.0 90 > th dose independent rect. 16 11
612 396.63 temperature 30.0 14400 > th dose dependent sin 9 NA
690 398.43 temperature 30.0 14400 > th dose independent sin 10 NA
692 398.50 temperature 25.0 14400 > th dose independent rect. 22 2
698 398.55 temperature 30.0 14400 < th dose independent sin 10 NA
699 398.58 temperature 25.0 14400 < th dose independent rect. 22 4
730 399.10 temperature 25.0 14400 > th dose independent rect. 21 5
987 401.62 temperature 30.0 14400 > th dose dependent no NA NA
988 401.62 temperature 30.0 14400 > th dose dependent rect. 8 11