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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0132000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0414) R2 : 0.609
β1 : 0.999 (0.186) R2dD : 0.0428 R2D : -0.165
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.94 (0.16) R2dE : 0.315 R2E : 0.282
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.98 (0.804) R2dD*E : 0.142 R2D*E : -0.00749
γ1 : -1.16 (0.0862) R2dN8 : 0.217 R2N8 : 0.203
σ : 0.741
deviance : 253.12
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.264
memory length : 1434
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 11.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.89 0.744 4.54 1.02 0.47 -3.01 1.12 -8.15 -1.15 23.6 1.243 1441 18.2 11.1
282.17 0.782 4.54 -0.337 0.463 -2.74 1.26 -- -1.29 23.1 1.485 1437 18 11.5
251.88 0.739 4.54 1.05 0.229 -2.98 -- -8.04 -1.16 23 1.273 1436 18.2 11.1
274.92 0.772 4.54 -0.278 0.639 -2.76 -- -- -1.48 22.4 2.241 1447 17.5 12.2
253.12 0.741 4.53 0.999 -- -2.94 -- -7.98 -1.16 -- 1.264 1434 18.2 11.1
468.72 1.01 4.49 -0.762 0.478 -- 1.5 -- -1.4 0.847 -- -- -- --
477.76 1.02 4.49 -0.815 0.48 -- -- -- -1.4 0.0949 -- -- -- --
269.97 0.765 4.53 -0.52 -- -2.73 -- -- -1.57 -- 2.19 1424 17.5 12.2
271.48 0.767 4.52 -- 0.402 -2.57 -- -- -1.44 22.3 2.427 1437 17.5 12
492.27 1.04 4.48 -0.8 -- -- -- -- -1.39 -- -- -- -- --
495.26 1.04 4.47 -- 0.469 -- -- -- -1.31 24 -- -- -- --
272.15 0.768 4.54 -- -- -2.64 -- -- -1.5 -- 2.337 1429 17.5 12
509.14 1.05 4.46 -- -- -- -- -- -1.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.82 radiation 1 1440 < th dose dependent rect. 18 11
2 265.94 radiation 1 1440 < th dose dependent rect. 18 9
5 267.20 radiation 1 1440 < th dose dependent rect. 18 2
9 267.51 radiation 1 1440 < th dose dependent rect. 18 5
12 273.79 temperature 25 1440 > th dose dependent rect. 7 17
15 273.84 temperature 25 1440 > th dose dependent rect. 15 22
58 274.39 temperature 25 1440 > th dose dependent rect. 21 22
66 274.43 temperature 25 1440 > th dose dependent rect. 11 23
69 274.49 temperature 25 1440 > th dose dependent no NA NA
85 274.77 radiation 1 14400 < th dose dependent rect. 4 1
91 274.81 temperature 25 1440 > th dose dependent rect. 9 23
112 275.04 radiation 1 14400 < th dose dependent rect. 2 3
127 275.22 temperature 25 1440 > th dose dependent sin 21 NA
185 276.26 temperature 25 1440 > th dose dependent rect. 16 1
191 276.47 wind 5 43200 > th dose dependent rect. 10 6
208 277.02 wind 5 43200 > th dose independent rect. 9 6
234 277.80 radiation 10 14400 < th dose dependent rect. 18 11
240 278.00 temperature 25 1440 > th dose dependent rect. 15 8
248 278.32 wind 5 43200 < th dose independent rect. 9 6
256 278.57 radiation 40 14400 < th dose dependent rect. 18 9
278 279.16 radiation 1 14400 < th dose dependent rect. 18 1
283 279.22 radiation 10 14400 < th dose dependent rect. 18 5
313 279.65 radiation 1 43200 > th dose independent rect. 18 1
334 279.83 wind 5 43200 > th dose independent rect. 8 8
406 281.01 wind 5 43200 > th dose dependent rect. 12 2
439 281.58 wind 5 43200 > th dose independent rect. 5 11
441 281.62 wind 5 43200 < th dose independent rect. 8 8
446 281.77 humidity 90 43200 > th dose dependent rect. 21 2
455 282.11 wind 5 43200 < th dose independent rect. 5 11
462 282.44 humidity 90 43200 > th dose independent rect. 21 2
476 283.07 temperature 25 1440 > th dose dependent rect. 11 3
478 283.12 wind 5 43200 > th dose dependent rect. 10 12
512 284.07 temperature 25 4320 < th dose independent rect. 7 3
526 284.42 radiation 1 43200 < th dose independent rect. 18 9
527 284.42 wind 5 43200 > th dose dependent rect. 5 11
533 284.55 radiation 1 43200 < th dose independent rect. 18 5
536 284.56 radiation 1 43200 < th dose independent rect. 18 3
564 285.02 temperature 25 4320 > th dose independent rect. 17 1
589 285.67 wind 7 43200 < th dose independent rect. 24 16
601 285.84 wind 5 43200 > th dose independent rect. 24 17
602 285.89 wind 7 43200 < th dose independent sin 0 NA
606 285.93 radiation 1 1440 > th dose independent rect. 17 13
616 286.17 temperature 25 4320 < th dose independent rect. 17 1
620 286.25 wind 5 43200 > th dose independent sin 1 NA
632 286.49 temperature 25 4320 > th dose independent rect. 7 4
649 286.78 wind 5 43200 > th dose independent rect. 11 3
650 286.81 wind 5 43200 > th dose dependent sin 23 NA
654 286.85 radiation 1 1440 < th dose dependent sin 13 NA
670 287.10 wind 7 43200 < th dose independent rect. 8 13
718 287.55 wind 7 43200 > th dose independent rect. 8 13
740 287.89 wind 5 14400 > th dose independent rect. 11 1
759 288.05 radiation 1 1440 < th dose independent rect. 17 13
792 288.31 wind 5 43200 < th dose independent rect. 20 21
816 288.56 wind 7 43200 > th dose independent rect. 5 16
844 288.82 wind 5 43200 > th dose independent rect. 20 21
852 288.93 wind 5 43200 < th dose independent rect. 20 1
859 288.98 wind 5 43200 > th dose dependent rect. 24 16
861 289.04 humidity 90 43200 < th dose independent rect. 18 5
863 289.05 radiation 1 43200 < th dose dependent rect. 21 8
888 289.28 humidity 90 43200 < th dose independent rect. 20 3
907 289.52 wind 5 43200 < th dose independent rect. 11 1
935 289.68 radiation 1 1440 < th dose dependent rect. 9 21
944 289.75 wind 5 43200 > th dose independent rect. 20 1
946 289.77 wind 3 43200 > th dose dependent rect. 20 1
951 289.79 temperature 30 1440 < th dose independent rect. 14 22
961 289.84 wind 5 43200 > th dose dependent rect. 5 17